Homologs in group_1614

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10635 FBDBKF_10635 81.6 Morganella morganii S1 phrB deoxyribodipyrimidine photo-lyase
EHELCC_14970 EHELCC_14970 81.6 Morganella morganii S2 phrB deoxyribodipyrimidine photo-lyase
NLDBIP_14800 NLDBIP_14800 81.6 Morganella morganii S4 phrB deoxyribodipyrimidine photo-lyase
LHKJJB_14545 LHKJJB_14545 81.6 Morganella morganii S3 phrB deoxyribodipyrimidine photo-lyase
HKOGLL_13165 HKOGLL_13165 81.6 Morganella morganii S5 phrB deoxyribodipyrimidine photo-lyase
PMI_RS15965 PMI_RS15965 54.4 Proteus mirabilis HI4320 phrB deoxyribodipyrimidine photo-lyase

Distribution of the homologs in the orthogroup group_1614

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1614

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P00914 2.97e-158 460 50 5 469 1 phrB Deoxyribodipyrimidine photo-lyase Escherichia coli (strain K12)
P25078 1.18e-156 456 50 6 473 1 phrB Deoxyribodipyrimidine photo-lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KNA8 1.26e-137 407 46 5 470 1 phrA Deoxyribodipyrimidine photo-lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P57386 1.23e-130 390 39 6 475 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AJ9 3.5e-123 370 37 4 471 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P27526 3.39e-99 313 36 8 498 3 phr Deoxyribodipyrimidine photo-lyase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q04449 1.16e-93 295 38 12 488 3 phr Deoxyribodipyrimidine photo-lyase Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
Q55081 8.73e-86 275 38 12 480 1 phrA Deoxyribodipyrimidine photo-lyase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A9CJC9 1.52e-80 261 35 14 498 1 phrA Deoxyribodipyrimidine photo-lyase Agrobacterium fabrum (strain C58 / ATCC 33970)
P05327 2.25e-80 260 36 12 490 1 phr Deoxyribodipyrimidine photo-lyase Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
P05066 4.2e-72 241 31 9 506 1 PHR1 Deoxyribodipyrimidine photo-lyase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9HQ46 1.2e-71 238 34 11 487 3 phr Deoxyribodipyrimidine photo-lyase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P12768 4.2e-64 217 34 10 470 3 phr Deoxyribodipyrimidine photo-lyase Streptomyces griseus
P61496 4.94e-61 208 35 11 422 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
P61497 3.26e-57 198 34 7 419 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q96524 1.6e-49 182 29 10 494 1 CRY2 Cryptochrome-2 Arabidopsis thaliana
P40115 1.98e-48 176 28 12 500 2 PHR1 Cryptochrome-1 Sinapis alba
Q43125 5.53e-45 170 28 9 497 1 CRY1 Cryptochrome-1 Arabidopsis thaliana
Q3IPX9 1.73e-43 162 29 17 488 3 cry Cryptochrome DASH Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
P77967 7.52e-43 161 28 17 500 1 cry Cryptochrome DASH Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q7NMD1 1.17e-41 158 28 14 483 3 cry Cryptochrome DASH Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
Q7UJB1 1.83e-40 154 26 14 502 3 cry Cryptochrome DASH Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
Q5QXE0 1.58e-39 151 29 17 454 3 cry Cryptochrome DASH Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q49AN0 5.63e-39 152 27 14 492 1 CRY2 Cryptochrome-2 Homo sapiens
O48652 1.38e-38 150 33 8 295 1 UVR3 (6-4)DNA photolyase Arabidopsis thaliana
Q4KML2 2.86e-38 149 27 18 486 2 cry-dash Cryptochrome DASH Danio rerio
Q6ZZY0 1.79e-37 148 28 16 497 2 CRY1 Cryptochrome-1 Sylvia borin
Q9R194 3.86e-37 147 26 14 491 1 Cry2 Cryptochrome-2 Mus musculus
Q7PYI7 6.21e-37 145 32 9 289 2 Cry1 Cryptochrome-1 Anopheles gambiae
Q5IZC5 6.69e-37 146 28 16 499 2 CRY1 Cryptochrome-1 Erithacus rubecula
Q923I8 7.63e-37 146 27 14 495 1 Cry2 Cryptochrome-2 Rattus norvegicus
Q38JU2 1.08e-36 145 27 15 468 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Solanum lycopersicum
Q8QG61 1.12e-36 146 28 16 497 2 CRY1 Cryptochrome-1 Gallus gallus
Q8QG60 1.37e-36 145 26 14 491 2 CRY2 Cryptochrome-2 Gallus gallus
Q8WP19 4.17e-36 144 28 15 496 2 CRY1 Cryptochrome-1 Macaca fascicularis
Q16526 4.25e-36 144 28 15 496 1 CRY1 Cryptochrome-1 Homo sapiens
Q70AD6 1.89e-35 142 28 15 496 2 CRY1 Cryptochrome-1 Spalax judaei
Q32Q86 2.06e-35 142 28 16 497 1 Cry1 Cryptochrome-1 Rattus norvegicus
P97784 3.03e-35 142 28 16 497 1 Cry1 Cryptochrome-1 Mus musculus
Q0E2Y1 6.3e-35 140 30 11 325 3 UVR3 (6-4)DNA photolyase Oryza sativa subsp. japonica
Q75WS4 1.05e-34 139 28 19 485 2 cry-dash Cryptochrome DASH Xenopus laevis
B0WRR9 3.14e-34 137 32 9 273 3 cry Cryptochrome-1 Culex quinquefasciatus
Q651U1 5.3e-34 138 27 17 482 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Oryza sativa subsp. japonica
Q17DK5 2.48e-33 135 28 6 316 3 cry Cryptochrome-1 Aedes aegypti
O77059 6.85e-33 134 32 6 253 1 cry Cryptochrome-1 Drosophila melanogaster
Q293P8 2.81e-31 129 32 6 253 3 cry Cryptochrome-1 Drosophila pseudoobscura pseudoobscura
Q9KR33 4.94e-31 128 28 15 426 1 cry1 Cryptochrome DASH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5IFN2 1.71e-30 127 27 20 504 3 Ot01g06470 Cryptochrome DASH, chloroplastic/mitochondrial Ostreococcus tauri
Q87JP5 2.35e-29 123 28 17 437 3 cry Cryptochrome DASH Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9KS67 3.68e-28 120 27 15 447 1 cry2 Cryptochrome-like protein cry2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q84KJ5 5.11e-28 120 25 14 452 1 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Arabidopsis thaliana
Q7SI68 1.8e-23 107 30 9 267 3 cry Putative cryptochrome DASH, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q4I1Q6 2.31e-22 103 31 10 265 3 FGRRES_16955 Putative cryptochrome DASH Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q05380 1.55e-21 97 30 5 289 4 None Uncharacterized 31.6 kDa protein in atpI 5'region Synechococcus sp. (strain PCC 6716)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14345
Feature type CDS
Gene phrB
Product deoxyribodipyrimidine photo-lyase
Location 93432 - 94865 (strand: -1)
Length 1434 (nucleotides) / 477 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1614
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00875 DNA photolyase
PF03441 FAD binding domain of DNA photolyase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0415 Replication, recombination and repair (L) L Deoxyribodipyrimidine photolyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - -

Protein Sequence

MTDSVPAVVWLRQDLRLTDNTALHAACQAHRNVTLVFTATPQQWEQHAMSSSQQALIICQLRALNIAAAALGITLHVQPCSTYADAADWLAQWCRKHKTPAVYANNQYGLNEQRRDRRFAAILPDTCRFYTFDDSVLLPPGGVSTQQGGIYKVFTPFRRAFLNILMQTPVRVLPAPKAQGAPVTPADTGLTAQEHPLFPSGEDAALQRLADFCQRDAADYREQRDFPALRGTSQLSAYLATGIISVRQCLSTLRLNFPMVTDEPESGGYTWLSELIWREFYIHQLALNPDLSRHRPMQRWTESIIWSPDSDALTAWQQGKTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDWRRGEHYFMSRLVDGEFAANNGGWQWAASTGHDSVPYFRIFNPVTQGKRFDPDGSFIRRWLPELAAVPVKYIHTPHEWADKNQYALNYPHPMVDHSMARIRAIEAYETARHTAIKDDGR

Flanking regions ( +/- flanking 50bp)

CCCGCCTCTTATGACGCGGGCTTTTTTATAATGCGAACAGGGGAAAGGCTATGACGGACTCAGTACCGGCTGTTGTCTGGCTGCGGCAGGATCTGCGACTGACAGACAATACGGCTCTGCACGCCGCCTGTCAGGCGCACCGCAACGTAACACTGGTGTTTACTGCCACACCGCAGCAATGGGAACAACATGCGATGTCCTCATCGCAGCAGGCGCTGATTATTTGTCAGCTGCGTGCGCTGAATATTGCCGCAGCCGCATTGGGTATCACCCTGCATGTTCAGCCGTGCAGTACCTATGCCGATGCCGCAGACTGGCTGGCACAATGGTGCCGGAAACACAAAACACCTGCCGTCTATGCCAATAACCAGTACGGACTGAATGAACAGCGCCGTGACCGGCGATTTGCCGCCATTCTGCCGGATACCTGCCGTTTTTATACCTTTGATGACAGTGTGCTGCTGCCTCCGGGTGGCGTGAGTACACAACAGGGCGGGATCTATAAAGTTTTTACGCCTTTCCGCCGCGCATTTCTTAACATACTGATGCAAACTCCAGTCCGCGTTCTGCCCGCACCAAAAGCACAAGGTGCGCCGGTGACACCGGCAGATACCGGATTGACCGCACAAGAGCATCCGCTTTTTCCGTCCGGTGAAGATGCAGCACTGCAACGGCTGGCTGATTTCTGTCAGCGGGATGCGGCTGACTACCGTGAGCAACGGGACTTTCCGGCACTCCGTGGCACCAGTCAGCTCTCGGCATATCTGGCAACCGGCATTATCTCTGTACGCCAGTGCCTGAGCACTCTCCGCCTGAATTTCCCGATGGTGACAGATGAACCTGAAAGTGGCGGTTATACCTGGCTGAGCGAACTTATCTGGCGTGAGTTTTATATCCACCAGTTGGCTCTGAATCCGGATCTGAGCCGCCACCGCCCTATGCAGCGCTGGACAGAGTCTATTATCTGGTCACCGGACAGTGACGCACTCACCGCCTGGCAACAGGGGAAAACCGGATTCCCGATTGTGGATGCGGCAATGCGTCAGCTGAATGAAACGGGCTGGATGCACAACCGCCTGCGGATGATCACCGCAAGCTTTCTGGTAAAAGATTTATTAATCGACTGGCGGCGCGGAGAGCACTATTTTATGTCGCGCTTAGTCGATGGTGAATTTGCCGCCAATAATGGTGGCTGGCAGTGGGCGGCATCAACAGGGCATGATTCTGTGCCGTATTTCCGGATTTTTAACCCGGTAACTCAGGGGAAACGCTTTGATCCTGACGGCAGTTTTATCCGCCGCTGGCTGCCGGAACTCGCCGCAGTCCCGGTAAAATATATTCATACACCGCATGAATGGGCTGACAAAAATCAGTATGCGCTTAACTACCCACATCCGATGGTTGATCACAGTATGGCGCGGATCAGAGCTATTGAAGCCTACGAAACGGCCCGCCACACTGCAATAAAAGATGACGGGCGGTAATTACCTATTTATGTGCCTGCCGCCGCACAGAACGGTAGGTCAGCAAGTGT