Homologs in group_1614

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10635 FBDBKF_10635 53.7 Morganella morganii S1 phrB deoxyribodipyrimidine photo-lyase
EHELCC_14970 EHELCC_14970 53.7 Morganella morganii S2 phrB deoxyribodipyrimidine photo-lyase
NLDBIP_14800 NLDBIP_14800 53.7 Morganella morganii S4 phrB deoxyribodipyrimidine photo-lyase
LHKJJB_14545 LHKJJB_14545 53.7 Morganella morganii S3 phrB deoxyribodipyrimidine photo-lyase
HKOGLL_13165 HKOGLL_13165 53.7 Morganella morganii S5 phrB deoxyribodipyrimidine photo-lyase
F4V73_RS14345 F4V73_RS14345 54.4 Morganella psychrotolerans phrB deoxyribodipyrimidine photo-lyase

Distribution of the homologs in the orthogroup group_1614

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1614

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P00914 5.03e-174 500 52 4 472 1 phrB Deoxyribodipyrimidine photo-lyase Escherichia coli (strain K12)
P25078 9.58e-174 499 52 4 475 1 phrB Deoxyribodipyrimidine photo-lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KNA8 8.86e-142 417 45 7 482 1 phrA Deoxyribodipyrimidine photo-lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P57386 6.78e-140 413 42 3 470 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AJ9 7.91e-128 382 40 4 473 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P27526 4.1e-101 318 37 8 501 3 phr Deoxyribodipyrimidine photo-lyase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q04449 3.84e-92 291 37 14 489 3 phr Deoxyribodipyrimidine photo-lyase Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
Q55081 4.57e-91 288 38 12 470 1 phrA Deoxyribodipyrimidine photo-lyase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P05066 8.77e-90 287 34 11 503 1 PHR1 Deoxyribodipyrimidine photo-lyase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A9CJC9 3.34e-87 278 36 12 495 1 phrA Deoxyribodipyrimidine photo-lyase Agrobacterium fabrum (strain C58 / ATCC 33970)
Q9HQ46 4.81e-82 265 33 13 496 3 phr Deoxyribodipyrimidine photo-lyase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P05327 1.16e-80 261 35 13 478 1 phr Deoxyribodipyrimidine photo-lyase Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
P12768 2.73e-68 228 32 11 473 3 phr Deoxyribodipyrimidine photo-lyase Streptomyces griseus
P77967 3.23e-64 218 30 13 482 1 cry Cryptochrome DASH Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q96524 3.66e-63 218 32 14 499 1 CRY2 Cryptochrome-2 Arabidopsis thaliana
P40115 6.63e-61 210 30 12 511 2 PHR1 Cryptochrome-1 Sinapis alba
Q43125 3.7e-57 204 31 13 491 1 CRY1 Cryptochrome-1 Arabidopsis thaliana
P61496 6.22e-57 197 31 10 422 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q7UJB1 3.19e-56 197 30 17 480 3 cry Cryptochrome DASH Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
Q7NMD1 5.22e-52 186 29 14 491 3 cry Cryptochrome DASH Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
Q38JU2 6.59e-52 187 32 17 473 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Solanum lycopersicum
P61497 2.66e-50 179 29 9 420 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q3IPX9 1.03e-49 179 30 19 488 3 cry Cryptochrome DASH Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
O48652 5.47e-48 176 28 18 511 1 UVR3 (6-4)DNA photolyase Arabidopsis thaliana
Q0E2Y1 2.96e-47 174 28 16 490 3 UVR3 (6-4)DNA photolyase Oryza sativa subsp. japonica
Q9R194 1.16e-43 165 27 15 478 1 Cry2 Cryptochrome-2 Mus musculus
Q49AN0 2.06e-43 164 28 15 480 1 CRY2 Cryptochrome-2 Homo sapiens
Q5IFN2 3.99e-43 163 28 17 486 3 Ot01g06470 Cryptochrome DASH, chloroplastic/mitochondrial Ostreococcus tauri
Q75WS4 8.4e-43 162 28 18 492 2 cry-dash Cryptochrome DASH Xenopus laevis
Q4KML2 1.02e-42 161 27 17 467 2 cry-dash Cryptochrome DASH Danio rerio
Q5QXE0 5.27e-42 158 30 15 449 3 cry Cryptochrome DASH Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q923I8 7.71e-42 160 27 14 478 1 Cry2 Cryptochrome-2 Rattus norvegicus
Q8QG60 4.41e-41 158 26 15 478 2 CRY2 Cryptochrome-2 Gallus gallus
Q651U1 9.74e-41 157 28 14 488 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Oryza sativa subsp. japonica
Q32Q86 6.12e-40 155 27 15 482 1 Cry1 Cryptochrome-1 Rattus norvegicus
Q84KJ5 1.58e-39 153 25 12 453 1 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Arabidopsis thaliana
Q70AD6 2.1e-39 153 27 15 481 2 CRY1 Cryptochrome-1 Spalax judaei
Q8QG61 2.18e-39 154 26 14 482 2 CRY1 Cryptochrome-1 Gallus gallus
P97784 2.21e-39 153 27 15 482 1 Cry1 Cryptochrome-1 Mus musculus
Q8WP19 4.56e-39 152 27 15 482 2 CRY1 Cryptochrome-1 Macaca fascicularis
Q16526 4.56e-39 152 27 15 482 1 CRY1 Cryptochrome-1 Homo sapiens
Q6ZZY0 1.07e-38 152 26 14 482 2 CRY1 Cryptochrome-1 Sylvia borin
Q5IZC5 1.19e-38 151 26 12 477 2 CRY1 Cryptochrome-1 Erithacus rubecula
Q17DK5 8.91e-36 142 25 17 503 3 cry Cryptochrome-1 Aedes aegypti
Q9KR33 1.95e-35 140 27 15 451 1 cry1 Cryptochrome DASH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q7PYI7 5.75e-34 137 25 18 496 2 Cry1 Cryptochrome-1 Anopheles gambiae
Q87JP5 3.3e-33 134 30 16 440 3 cry Cryptochrome DASH Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
B0WRR9 1.77e-30 127 32 7 237 3 cry Cryptochrome-1 Culex quinquefasciatus
Q293P8 8.06e-29 122 24 17 506 3 cry Cryptochrome-1 Drosophila pseudoobscura pseudoobscura
Q7SI68 7.6e-27 117 29 5 274 3 cry Putative cryptochrome DASH, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
O77059 6.13e-26 114 28 9 269 1 cry Cryptochrome-1 Drosophila melanogaster
Q4I1Q6 7.64e-24 108 30 10 290 3 FGRRES_16955 Putative cryptochrome DASH Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q05380 4.06e-20 93 28 7 292 4 None Uncharacterized 31.6 kDa protein in atpI 5'region Synechococcus sp. (strain PCC 6716)
Q9KS67 8.7e-20 95 29 4 206 1 cry2 Cryptochrome-like protein cry2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P34205 3.63e-05 50 22 12 373 2 phr Deoxyribodipyrimidine photo-lyase Carassius auratus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15965
Feature type CDS
Gene phrB
Product deoxyribodipyrimidine photo-lyase
Location 3546054 - 3547484 (strand: -1)
Length 1431 (nucleotides) / 476 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1614
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00875 DNA photolyase
PF03441 FAD binding domain of DNA photolyase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0415 Replication, recombination and repair (L) L Deoxyribodipyrimidine photolyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - -

Protein Sequence

MHSAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKAVSPLSAPLFALPISSTKMFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRHWLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR

Flanking regions ( +/- flanking 50bp)

ACGCCAAGCGCTTATCGATCAACATCCAAAATTAGATTAAGAGAGGTTACATGCACTCAGCGCCTGTTCATTTAGTTTGGTTCCGTCATGATCTAAGAGTGACCGATAATAAAGCGCTCTTTTATGCTTGCCAAAATACACAGGCGCAGGTACATGCCATTTTTACCGTCACGCCTGCACAGTGGAAAGCCCATCATATGGCTTTATCACAGCAGGCGTTTATTCATGATGCATTGCTTAATCTTTCCCATGCGCTAGCTAAATTAAATATTCCACTGACACTTATCATCAGTGATACATATGCTGATGCGGCACAAAGTATTGTGGATTATTGTCAGCAACATCAGGTCACTGCGCTATTTTTTAATCATCAATATGCGCTTAATGAGCAAAACCGTGATAAAAAAGTAATGGAATTACTCGCCCATAACACCACGGTTTATTGTTACCACGATAACGTTTTTGTGCCACCGGGGAATGTCGTGACCCAACAAGGAGAGATGTACAAAGTCTTTACTCCTTTTAGAACCGCATTTTTACGGCTATTTCTATCGCAAGATAATGCTTCATTACCTGCCCCCGAAATAAGAGCACACCAAAAAGCCGTTTCACCGTTAAGTGCACCACTTTTTGCACTACCAATATCATCAACCAAGATGTTCCCAGCAAGCGAACAAGCAGCGTTACAGCGTTTAAAACAGTTTTGCTATGAAAGGGTGATACATTATGCAAAATGGCGAGATATTCCTGCTATTGATGGAACCAGTCAATTATCCCCTTATCTTGCCATAGGCCTAGTGTCTGTGCGCCAATGTTTTAATCGCCTTTACCAAACAGAGCCTGATTTCTTAGAAAATAACCATTCCAGTACATTTGTTTGGTTTAATGAGTTAGTTTGGCGCGAGTTTTATCAACATCTAATAGTTGCTAACCCGAGTTTATCCAAACAGATAGCTTTTCAACCATGGACAGAAAATATTCGCTGGCGTAATGACCAAACTGAATTTACCGCTTGGACACAGGGCTTAACAGGCTTTCCTATTATTGATGCCGCGATGCGACAACTGAATCAAACCGGCTGGATGCACAATCGCTTACGTATGCTGACGGCAAGTTTTTTAGTCAAAGATCTATTAATTGATTGGCGCTGGGGGGAAAATTATTTTATGTCACAATTAATTGATGGTGATTTCGCGTCAAATAATGGTGGCTGGCAATGGGCTGCATCAACAGGCACTGATGCTGTACCTTATTTTCGTATTTTTAATCCGACAACCCAAGGACGTAAGTTTGATCCTGATGGTGAGTTTATCCGCCACTGGCTACCAGAGCTTGCTGATGTCCCAGATCGCTATATCCATACTCCTTCTGAATGGGCAATCAAAACAGGTCACTACCTCGATTATCCACAACCAATTGTTGATCACGCCAAAGCACGAGTAACTGCAATTGCGTCTTATGAAGAGGCCAAAAAAAGGTAAAATAGCGCGATATTATCTCTCAATCCTTGGCGGGCTATTGTGAAAACACC