Homologs in group_1567

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10155 FBDBKF_10155 100.0 Morganella morganii S1 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
EHELCC_04955 EHELCC_04955 100.0 Morganella morganii S2 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
NLDBIP_04955 NLDBIP_04955 100.0 Morganella morganii S4 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
LHKJJB_13675 LHKJJB_13675 100.0 Morganella morganii S3 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
F4V73_RS00185 F4V73_RS00185 93.4 Morganella psychrotolerans nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
PMI_RS02035 PMI_RS02035 80.9 Proteus mirabilis HI4320 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_1567

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1567

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WH71 0.0 521 77 0 317 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 0.0 521 77 0 317 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CBQ2 0.0 517 76 0 320 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P17424 0.0 509 76 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37146 4.89e-180 503 75 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
P9WH73 1.14e-158 449 66 0 317 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 1.14e-158 449 66 0 317 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P75461 5.52e-123 359 52 0 314 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47471 5.34e-118 346 50 0 316 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9XC20 7.82e-117 343 51 0 314 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
P50621 2.7e-83 257 42 4 319 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O30601 2.28e-77 242 41 4 319 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 2.28e-77 242 41 4 319 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
Q9KFH7 1.84e-22 99 27 9 322 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O83092 3.88e-21 95 27 13 304 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q89AS5 1.35e-17 85 26 11 349 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P69924 1.37e-12 71 25 8 285 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 1.37e-12 71 25 8 285 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 1.44e-12 71 25 8 285 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8K9W4 5.64e-12 69 24 11 324 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O67475 8.58e-12 69 27 7 220 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
P57275 1e-11 68 24 12 333 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P43755 1.12e-11 68 25 10 297 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P55983 1.51e-11 67 25 4 197 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKC3 1.6e-11 67 25 4 197 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
P50651 1.89e-11 67 22 5 253 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
P49730 6.41e-10 62 22 5 256 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
O84835 2.71e-08 58 23 4 185 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
O57175 7.68e-08 56 23 3 203 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
P11158 7.89e-08 56 23 3 203 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
Q4KLN6 8.03e-08 57 22 7 262 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
P42521 1.13e-07 56 20 6 259 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
Q9PL92 1.24e-07 56 22 4 185 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
Q9Z6S4 1.48e-07 55 20 11 303 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
P20493 1.81e-07 55 23 3 203 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
A0A7H0DN21 1.93e-07 55 23 3 203 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P29883 2e-07 55 22 3 203 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
P0DSS7 2.32e-07 55 23 3 203 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
P0DSS8 2.54e-07 55 23 3 203 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
P79733 3.03e-07 55 21 8 261 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
Q60561 3.41e-07 55 21 7 262 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
Q4R741 5.56e-07 54 22 7 257 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
P11157 5.7e-07 54 21 7 262 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
Q9LSD0 6.56e-07 53 21 6 257 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
Q5R9G0 1.21e-06 53 22 7 257 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q7LG56 1.3e-06 53 22 7 257 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
Q4R7Q7 2.9e-06 52 23 4 202 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
P31350 3.44e-06 52 23 4 202 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
O46310 4.07e-06 51 22 3 180 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
Q6PEE3 6.43e-06 50 21 6 256 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P0DKH3 8.77e-06 50 21 3 201 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
P07201 1.67e-05 49 24 5 199 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
P28847 3.21e-05 48 25 10 269 3 RIR2 Ribonucleoside-diphosphate reductase small subunit Equine herpesvirus 1 (strain Ab4p)
O15910 3.72e-05 48 19 7 263 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
Q66662 0.000191 46 21 9 285 3 RIR2 Ribonucleoside-diphosphate reductase small subunit Equine herpesvirus 2 (strain 86/87)
P09938 0.000206 46 24 6 183 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P50650 0.000226 46 23 5 181 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12860
Feature type CDS
Gene nrdF
Product class 1b ribonucleoside-diphosphate reductase subunit beta
Location 122356 - 123318 (strand: 1)
Length 963 (nucleotides) / 320 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1567
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MTTLSRISAINWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWQTLTPAEKQLTIRVFTGLTLLDTIQNTVGAPALIPDALTPHEEAVLSNISFMEAVHARSYSSVFSTLCSTQEIDDAYRWSEEEPTLQNKAAIILGYYRDPHPLKKKVASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRSLQNYDEQTRKEIKEFTFSLLFDLYENEVSYTRKLYDGAGWSEDVIKFLHYNANKALMNLGYEALFPESVTDVSPAILSALSPDANENHDFFSGSGSSYVIGKAVNTEDEDWDF

Flanking regions ( +/- flanking 50bp)

CGGGCTGTGTTTCCTGCGCCGTATAAACCGTTTTATATCAGGATATTATCATGACCACATTAAGCCGCATTTCCGCGATTAACTGGAACCGGATTGAGGATGACAAAGACCTCGAGGTCTGGAACCGTCTGACCAGCAACTTCTGGCTGCCGGAAAAAGTACCGCTCTCCAATGACATTCCGTCGTGGCAGACACTGACTCCGGCAGAGAAACAGCTGACCATCCGCGTGTTCACCGGGCTGACCCTGCTGGATACCATTCAGAACACGGTCGGCGCACCGGCGCTTATCCCGGATGCCCTGACACCGCATGAAGAAGCCGTGCTCTCCAATATCAGCTTTATGGAAGCGGTACATGCCCGCTCTTACAGCTCGGTTTTCTCCACGCTCTGCTCCACACAGGAGATTGATGACGCCTACCGCTGGAGTGAAGAGGAACCGACCCTGCAAAATAAAGCAGCGATTATCCTCGGCTATTACCGTGACCCGCACCCGTTGAAAAAGAAAGTCGCCAGTGTGTTTCTGGAATCCTTCTTATTCTATTCCGGATTTTATTTACCGATGTACTGGTCAAGCCGCGCCAAGCTGACGAATACCGCCGATCTTATCCGCCTGATTATCCGGGATGAAGCAGTTCACGGCTATTATATCGGCTATAAATTCCAGCGCTCATTACAGAATTATGATGAACAAACCCGCAAAGAAATAAAGGAATTTACCTTCAGTCTGTTATTTGATTTATACGAGAATGAAGTCAGTTATACGCGGAAATTATATGACGGTGCCGGATGGTCTGAGGATGTGATTAAATTCCTGCATTACAACGCCAATAAGGCTCTGATGAACTTAGGCTATGAAGCACTGTTTCCGGAGAGTGTGACGGATGTCAGCCCGGCGATATTATCGGCGCTGTCACCGGATGCCAACGAGAATCACGATTTCTTTTCCGGATCCGGCTCTTCTTATGTGATTGGTAAAGCGGTGAACACAGAAGATGAAGACTGGGATTTTTAAATCAATCACTTCCGTTTAAGTATCGCACTATAAACACCGGTTTTATTAAT