Homologs in group_1567

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10155 FBDBKF_10155 80.9 Morganella morganii S1 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
EHELCC_04955 EHELCC_04955 80.9 Morganella morganii S2 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
NLDBIP_04955 NLDBIP_04955 80.9 Morganella morganii S4 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
LHKJJB_13675 LHKJJB_13675 80.9 Morganella morganii S3 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
HKOGLL_12860 HKOGLL_12860 80.9 Morganella morganii S5 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
F4V73_RS00185 F4V73_RS00185 82.8 Morganella psychrotolerans nrdF class 1b ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_1567

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1567

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WH71 0.0 510 73 0 321 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 0.0 510 73 0 321 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P17424 0.0 509 75 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37146 2.77e-180 503 74 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
Q9CBQ2 3.95e-177 496 72 0 317 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P9WH73 9.6e-156 441 64 0 322 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 9.6e-156 441 64 0 322 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P75461 1.81e-116 342 50 0 318 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47471 2.25e-111 329 48 0 319 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9XC20 3.41e-111 329 50 0 314 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
P50621 3.11e-86 265 43 7 321 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O30601 1.07e-79 248 41 4 320 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 1.07e-79 248 41 4 320 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
Q9KFH7 3.63e-21 95 25 7 281 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O83092 3.56e-20 92 28 12 298 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q89AS5 2.65e-15 79 26 13 350 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P49730 7.7e-14 74 23 6 256 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
Q4R741 9.9e-13 71 24 8 262 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
Q7LG56 1.92e-12 70 24 8 262 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
Q5R9G0 1.96e-12 70 24 8 262 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q9ZKC3 4.25e-12 69 25 2 191 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
P55983 4.8e-12 69 25 2 191 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
P57275 6.03e-12 69 26 12 335 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O67475 7.67e-12 69 30 4 173 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
Q6PEE3 1.39e-11 68 24 7 259 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P69924 2.55e-11 67 28 4 199 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 2.55e-11 67 28 4 199 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P42521 3.07e-11 67 22 8 258 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
P37427 3.65e-11 67 28 4 199 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P50651 7.53e-11 65 22 5 259 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
O46310 1.44e-10 65 23 6 245 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
P43755 9.14e-10 62 25 4 213 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9W4 6.21e-09 60 26 3 195 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9LSD0 7.17e-09 59 22 7 257 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
P07201 8.97e-09 59 23 8 260 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
Q9Z6S4 9.19e-09 59 24 6 187 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
P09938 9.31e-09 59 26 7 184 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P0DSS7 1.13e-08 59 21 8 303 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
Q9C167 1.2e-08 59 24 11 259 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
P0DKH3 1.9e-08 58 21 7 257 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
P79733 2.08e-08 58 21 9 261 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
P20493 2.12e-08 58 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
P11158 3.12e-08 57 21 5 257 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
O57175 3.12e-08 57 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
Q4KLN6 3.55e-08 57 22 11 274 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
P0DSS8 4.03e-08 57 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
A0A7H0DN21 5.98e-08 57 23 3 192 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P29883 7.45e-08 56 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
P42170 8.75e-08 56 22 9 264 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
Q60561 1.59e-07 55 21 10 274 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
O84835 1.96e-07 55 21 11 304 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PL92 2.09e-07 55 21 11 304 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
Q4R7Q7 2.54e-07 55 22 9 258 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
O15910 3.02e-07 55 20 6 247 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
P32209 3.57e-07 54 21 7 254 3 C14L Ribonucleoside-diphosphate reductase small chain Swinepox virus (strain Kasza)
P31350 3.78e-07 54 20 8 262 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
P11157 4.42e-07 54 20 9 262 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
Q197B2 1.75e-06 52 23 13 311 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3
Q91FE8 3.71e-06 51 20 9 340 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
P11156 6.59e-06 50 28 1 124 3 NRDB Ribonucleoside-diphosphate reductase subunit beta Enterobacteria phage T4
P36603 2.68e-05 48 22 13 316 3 suc22 Ribonucleoside-diphosphate reductase small chain Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P48592 8.77e-05 47 20 7 257 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
Q9DHU2 9.71e-05 47 20 4 191 3 20L Ribonucleoside-diphosphate reductase small chain Yaba-like disease virus
Q8SRR2 0.000158 46 22 11 262 3 ECU06_0730 Ribonucleoside-diphosphate reductase small chain Encephalitozoon cuniculi (strain GB-M1)
Q77MS0 0.000792 44 23 8 284 3 RIR2 Ribonucleoside-diphosphate reductase small subunit Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02035
Feature type CDS
Gene nrdF
Product class 1b ribonucleoside-diphosphate reductase subunit beta
Location 481605 - 482573 (strand: -1)
Length 969 (nucleotides) / 322 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1567
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MSASYLSRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQDSDPLKKKIASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQNIKDFAFSLLLDLYDNEVKYTEDLYDSVGWTEDVKKFLHYNANKALMNLGYEALFPDEITNVSPAILSSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWDF

Flanking regions ( +/- flanking 50bp)

AGGCTGTGTTTCATGCGCCCTTTAATAATAATGATAAGGAAAGTGTTACTATGTCTGCATCTTATTTAAGTCGTGTTAATGCGATAAATTGGAATCGTATTGAAGACGAAAAAGATTTAGAAGTTTGGAACCGTTTAACCATGAATTTTTGGTTACCCGAAAAAATTCCACTTTCTAATGATATACCTTCATGGAATACCTTAACCCAAGCTGAAAAACAGTTGACTATCCGTGTATTTACAGGGCTTACACTGCTCGATACGATACAAAATACGGTCGGGGCACCAACCTTAATGCCTGATGCTCAGACTCCTCATGAAGAGGCGGTATTATCGAATATCTGTTTTATGGAAGCGGTACATGCTCGCTCTTATAGCTCGATATTTTCGACACTCTGCTTAACAACAGATGTTGATGATGCTTATCGTTGGAGTGAAGAAAATACCTATTTGCAAAAGAAATCAGATATTATTCTGCGTTATTATCAAGATAGTGATCCATTAAAGAAAAAAATTGCCAGTGTATTTTTAGAGTCTTTTTTATTCTATTCTGGATTTTATTTACCAATGTATTGGTCAAGTCGAGGGAAATTAACCAATACAGCCGACTTAATTCGTTTAATTATTCGTGACGAAGCTGTGCATGGTTATTATATTGGCTATAAATTCCAAAATCAGTTATTAAATAAATCATCATTAGAGAAACAAAATATTAAAGACTTTGCTTTCTCATTATTATTAGATTTATATGATAATGAAGTTAAATATACAGAAGATCTCTACGACTCTGTCGGTTGGACAGAAGATGTAAAAAAATTCCTTCATTATAATGCGAATAAAGCGCTGATGAATTTAGGTTATGAAGCACTATTTCCAGATGAAATAACTAATGTTAGTCCAGCAATACTTTCATCACTATCGCCAGATGCAAATGAAAATCATGATTTCTTTTCTGGCTCAGGCTCTTCTTATGTTATTGGTAAAACGATCAATACCGAAGATGATGACTGGGATTTCTAGCTAACCCTCTACAGCAAAAAACAGAATACATTCATATTAATTATGAATTA