Homologs in group_1615

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10155 FBDBKF_10155 93.4 Morganella morganii S1 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
EHELCC_04955 EHELCC_04955 93.4 Morganella morganii S2 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
NLDBIP_04955 NLDBIP_04955 93.4 Morganella morganii S4 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
LHKJJB_13675 LHKJJB_13675 93.4 Morganella morganii S3 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
HKOGLL_12860 HKOGLL_12860 93.4 Morganella morganii S5 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta
PMI_RS02035 PMI_RS02035 82.8 Proteus mirabilis HI4320 nrdF class 1b ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_1615

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1615

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WH71 0.0 514 76 0 317 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 0.0 514 76 0 317 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CBQ2 0.0 511 75 0 320 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P17424 6.37e-180 502 75 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37146 4.46e-177 495 73 0 317 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
P9WH73 7.04e-158 447 66 0 317 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 7.04e-158 447 66 0 317 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P75461 1.03e-118 348 51 0 314 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47471 1.49e-116 342 50 0 316 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9XC20 6.38e-112 331 50 0 314 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
P50621 1.79e-82 255 41 4 319 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O30601 7.11e-77 241 40 4 319 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 7.11e-77 241 40 4 319 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
Q9KFH7 9.87e-24 102 26 8 322 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O83092 1.6e-20 94 27 11 308 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q89AS5 1e-16 83 29 5 217 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P50651 7.5e-15 77 23 5 253 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
P69924 2.62e-13 73 24 8 285 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 2.62e-13 73 24 8 285 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 6.65e-13 72 24 8 285 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55983 1.35e-12 70 26 4 197 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKC3 1.39e-12 70 26 4 197 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
O67475 3.29e-12 70 27 7 219 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
Q8K9W4 8.24e-12 68 23 10 327 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57275 8.95e-12 68 25 9 285 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P42521 4.49e-11 66 22 6 259 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
P43755 1.56e-10 65 24 8 296 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9Z6S4 3.14e-10 63 22 12 307 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
P49730 3.45e-10 63 22 5 256 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
Q4R741 8.59e-10 62 22 8 259 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
P20493 1.24e-09 62 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
P11158 1.6e-09 61 21 5 257 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
O57175 1.68e-09 61 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
P0DSS8 1.71e-09 61 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
O84835 1.74e-09 61 25 7 190 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P0DSS7 1.76e-09 61 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
Q5R9G0 2.11e-09 61 22 8 259 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q7LG56 2.15e-09 61 22 8 259 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
Q60561 2.69e-09 61 22 6 256 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
P79733 2.97e-09 61 21 7 258 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
Q9PL92 3.1e-09 60 21 12 307 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
A0A7H0DN21 3.18e-09 60 21 5 257 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P29883 3.78e-09 60 21 5 257 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
Q4KLN6 5.68e-09 60 21 6 256 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
Q6PEE3 1.49e-08 58 22 8 256 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P11157 1.99e-08 58 21 6 256 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
P07201 6.85e-08 57 24 6 206 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
P0DKH3 8.43e-08 56 23 3 178 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
O46310 1.01e-07 56 21 7 257 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
Q9LSD0 3.17e-07 54 21 7 257 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
Q4R7Q7 3.31e-07 55 20 7 256 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
P31350 3.76e-07 54 20 7 256 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
P32209 4.31e-07 53 22 5 253 3 C14L Ribonucleoside-diphosphate reductase small chain Swinepox virus (strain Kasza)
P48592 7.65e-07 53 21 7 256 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
P09938 1.48e-06 53 25 6 183 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O15910 2.67e-06 52 19 7 263 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
Q9C167 3.68e-06 51 22 9 257 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
P42170 6.18e-06 50 20 9 265 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
Q7T6Y9 7.16e-06 50 23 4 176 3 RNR2 Ribonucleoside-diphosphate reductase small chain Acanthamoeba polyphaga mimivirus
P50650 7.45e-06 50 23 3 180 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)
P50649 6.4e-05 47 23 4 176 3 RNR2 Ribonucleoside-diphosphate reductase small subunit Plasmodium falciparum (isolate FCR-3 / Gambia)
A0QMC0 7.27e-05 47 23 10 278 3 MAV_4937 R2-like ligand binding oxidase Mycobacterium avium (strain 104)
Q73TP6 7.4e-05 47 23 10 278 3 MAP_3672 R2-like ligand binding oxidase Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)
Q91FE8 7.63e-05 47 19 8 341 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
Q9DHU2 8.53e-05 47 21 4 191 3 20L Ribonucleoside-diphosphate reductase small chain Yaba-like disease virus
Q4JQV7 0.000258 45 26 5 175 1 RIR2 Ribonucleoside-diphosphate reductase small subunit Varicella-zoster virus (strain Oka vaccine)
P09247 0.000258 45 26 5 175 3 RIR2 Ribonucleoside-diphosphate reductase small subunit Varicella-zoster virus (strain Dumas)
Q197B2 0.000783 44 21 11 318 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00185
Feature type CDS
Gene nrdF
Product class 1b ribonucleoside-diphosphate reductase subunit beta
Location 48643 - 49605 (strand: -1)
Length 963 (nucleotides) / 320 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1615
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MTTLSRVSAINWNRIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWQTLTQDEKQLTIRVFTGLTLLDTIQNTVGAPALIPDAQTPHEEAVLSNIGFMEAVHARSYSSVFSTLCSTQEIDDAYRWSEEEPTLQNKADIILSYYRDPHPLKKKVASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALLNYEEKTRQEIKEFTFSLLFDLYENEINYTRKLYDVVGWSEDVIKFLHYNANKSLMNLGYEALFPDSVTDVSPAILSALSPDANENHDFFSGSGSSYVIGKAINTEDEDWNF

Flanking regions ( +/- flanking 50bp)

CCGGCTGTGTCTCTTGTGCCGTATAAACAGAATAAAATCAGGACATTACCATGACAACATTAAGCCGCGTTTCGGCAATAAACTGGAACCGCATAGAGGATGACAAAGACCTGGAAGTGTGGAACCGACTGACCAGCAACTTCTGGCTGCCGGAAAAAATTCCGCTGTCGAATGATATTCCGTCCTGGCAGACACTGACACAGGATGAAAAACAACTGACCATCCGTGTATTCACCGGGTTGACGCTGCTCGATACGATTCAGAATACCGTCGGCGCACCGGCACTGATCCCGGATGCTCAAACCCCGCATGAAGAAGCGGTACTCTCCAATATCGGTTTTATGGAAGCGGTCCATGCCCGCTCTTACAGCTCCGTTTTCTCCACACTCTGCTCTACACAGGAGATTGATGATGCCTACCGCTGGAGTGAAGAAGAGCCCACCCTGCAAAATAAAGCGGATATTATTCTCAGCTATTACCGCGACCCGCATCCGCTGAAAAAGAAAGTCGCCAGCGTCTTTCTCGAATCCTTCTTATTCTATTCCGGATTCTATTTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACAAATACCGCCGATTTGATCCGGTTGATTATCCGCGATGAGGCTGTACATGGTTATTATATCGGGTATAAATTTCAGCGGGCATTGCTCAATTATGAAGAAAAAACCCGGCAGGAAATAAAAGAATTCACCTTCAGCCTGTTATTTGATTTATATGAAAATGAAATCAATTACACCCGGAAATTATATGACGTTGTCGGATGGTCTGAAGATGTGATTAAATTTCTGCATTATAATGCCAATAAATCCCTGATGAATTTGGGTTATGAAGCCTTATTTCCGGACAGTGTAACCGATGTCAGTCCGGCTATATTATCGGCATTATCCCCGGATGCGAATGAGAACCATGATTTCTTCTCCGGCTCGGGGTCATCTTATGTCATAGGAAAGGCCATTAATACAGAAGATGAGGACTGGAATTTTTAAACCAATCACTTTTATTAATCTGTGGCCCTTTTGCAGCACGCTTTACCAAT