Homologs in group_1525

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09850 FBDBKF_09850 100.0 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_04650 EHELCC_04650 100.0 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_04650 NLDBIP_04650 100.0 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_13980 LHKJJB_13980 100.0 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS00495 F4V73_RS00495 83.9 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS02770 PMI_RS02770 56.5 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1525

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1525

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 3.56e-28 111 30 4 228 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
Q8NRR3 4.36e-09 59 31 1 103 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8FQS2 2e-07 54 28 1 103 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q6NI56 2.63e-07 54 31 1 80 3 ripA HTH-type transcriptional regulator RipA Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
P0C2V5 1.98e-06 51 25 8 252 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
A1JU91 2.7e-06 50 25 8 252 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q5HKE0 5.93e-06 49 25 0 77 3 SERP2406 Uncharacterized response regulatory protein SERP2406 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
B1JNC4 7.6e-06 49 33 2 81 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66FF1 9.41e-06 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 9.41e-06 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TRS7 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 1e-05 49 36 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
Q8CQE3 1.08e-05 48 25 0 77 3 SE_0165 Uncharacterized response regulatory protein SE_0165 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P28808 2.65e-05 47 25 8 232 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
Q6GK93 3.16e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain MRSA252)
Q8NYJ9 3.71e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain MW2)
Q6GCQ3 3.71e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain MSSA476)
Q5HJF7 3.71e-05 47 24 0 79 2 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain COL)
Q2G1E1 3.71e-05 47 24 0 79 1 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK47 3.71e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain USA300)
Q7A7X9 3.78e-05 47 24 0 79 1 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain N315)
Q99X00 3.78e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YV56 5.23e-05 47 24 0 79 3 hptR Transcriptional regulatory protein HptR Staphylococcus aureus (strain bovine RF122 / ET3-1)
O32071 7.71e-05 47 30 1 80 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
O31449 0.000147 45 28 0 80 4 ybfI Uncharacterized HTH-type transcriptional regulator YbfI Bacillus subtilis (strain 168)
P40408 0.000197 45 30 2 91 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
Q00753 0.000218 45 24 3 127 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P54722 0.000258 45 30 2 96 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
Q32A71 0.000276 45 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q83PD9 0.000328 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 0.000328 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q1R413 0.000335 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 0.000335 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q8X7B3 0.000335 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
P09378 0.000341 44 28 1 83 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 0.000341 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 0.000341 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q31U83 0.00038 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 0.00038 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 0.00038 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 0.00038 44 28 1 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
Q56143 0.000686 41 29 1 86 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9E2 0.000693 41 29 1 86 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 0.000693 41 29 1 86 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 0.000693 41 29 1 86 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
P07642 0.001 43 23 2 103 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12555
Feature type CDS
Gene araC
Product AraC-type DNA-binding domain and AraC-containing proteins
Location 67950 - 68714 (strand: -1)
Length 765 (nucleotides) / 254 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1525
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF02311 AraC-like ligand binding domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MAWLKQSDAFDADSYSAPLIGIAAEMAAQHDSGFHCHQRGQLLFTERGAIQITLTDTLSVLPPTRVAWIPPQMLHRAQMFEAVGYRSLYPDAQLSACLPPTCEIFGVSPLLREILFLFAGLPFDSDWTQPRLQHLLPVFLDELALAGREDMQLPLPSDRRLKTLDPRILPPQLNELASRCGAGEKTITRIFRRETGMSYQQWRQQWRLIKSVELLAKKYRSSDIAQALGFASDSAFVSFFRKMTGKTPGEYMGK

Flanking regions ( +/- flanking 50bp)

GGATGTCTTATTATAATAATAAGGACATTCTGTTTATCAAAAGGGACAATATGGCGTGGCTGAAGCAAAGTGATGCATTTGATGCGGACAGCTATTCCGCACCACTGATTGGCATTGCCGCAGAGATGGCGGCGCAGCATGATTCCGGTTTTCACTGCCATCAGCGCGGACAATTGCTGTTTACTGAGCGGGGGGCGATTCAGATTACCCTGACGGACACGCTCTCTGTTCTGCCGCCGACGCGGGTAGCGTGGATCCCGCCGCAGATGCTGCACCGTGCACAAATGTTTGAGGCTGTCGGTTACCGCTCACTGTATCCGGATGCGCAACTCAGCGCCTGTCTGCCGCCAACCTGTGAAATCTTCGGCGTATCGCCGCTGCTGCGTGAGATCCTGTTTCTCTTTGCCGGACTGCCGTTTGACAGTGACTGGACACAACCCCGTTTACAGCATCTGCTGCCGGTATTTCTGGATGAGCTGGCGCTGGCCGGGCGGGAAGATATGCAGTTACCGCTGCCGTCGGACCGGCGGCTGAAAACCCTGGATCCCCGGATACTGCCGCCGCAGCTTAATGAGCTGGCATCCCGCTGCGGTGCCGGGGAAAAGACGATAACGCGGATTTTCCGGCGGGAAACCGGTATGAGCTACCAGCAGTGGCGGCAGCAGTGGCGATTAATAAAATCTGTTGAACTTTTGGCGAAAAAATACCGCAGCAGTGATATTGCACAGGCGCTCGGATTTGCCAGTGACAGCGCGTTTGTCTCTTTCTTCCGTAAGATGACCGGGAAAACACCCGGTGAATATATGGGTAAATGAATAGCCGGGAGTTAAAAATGCATAAAAAAACCCTCCGGAGAGGGTTTTAT