Homologs in group_1025

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05770 FBDBKF_05770 100.0 Morganella morganii S1 ribE riboflavin synthase subunit alpha
EHELCC_11820 EHELCC_11820 100.0 Morganella morganii S2 ribE riboflavin synthase subunit alpha
NLDBIP_12160 NLDBIP_12160 100.0 Morganella morganii S4 ribE riboflavin synthase subunit alpha
LHKJJB_12020 LHKJJB_12020 100.0 Morganella morganii S3 ribE riboflavin synthase subunit alpha
F4V73_RS03555 F4V73_RS03555 92.2 Morganella psychrotolerans - riboflavin synthase
PMI_RS06775 PMI_RS06775 75.2 Proteus mirabilis HI4320 - riboflavin synthase

Distribution of the homologs in the orthogroup group_1025

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1025

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFU9 6.69e-110 317 70 0 208 3 ribE Riboflavin synthase Shigella flexneri
P0AFU8 6.69e-110 317 70 0 208 1 ribC Riboflavin synthase Escherichia coli (strain K12)
P45273 1.66e-90 267 61 0 202 3 ribE Riboflavin synthase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8KA22 7.94e-78 235 53 0 206 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57212 6.21e-75 228 49 0 208 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AX1 1.17e-60 192 47 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9Z820 2.21e-52 170 47 3 202 3 ribE Riboflavin synthase Chlamydia pneumoniae
Q9PJZ1 8.4e-40 138 40 5 206 3 ribE Riboflavin synthase Chlamydia muridarum (strain MoPn / Nigg)
P50854 1.18e-38 135 41 3 186 3 ribE Riboflavin synthase Actinobacillus pleuropneumoniae
O84410 2.48e-38 134 40 4 205 3 ribE Riboflavin synthase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P21578 4.49e-38 134 36 2 191 1 luxY Yellow fluorescent protein Aliivibrio fischeri
P80893 1.99e-36 129 37 4 199 1 Y1-BFP Blue fluorescence protein Aliivibrio fischeri
Q9Y7P0 1.75e-35 127 39 2 186 1 rib5 Riboflavin synthase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O67604 2.31e-35 127 35 4 211 3 ribE Riboflavin synthase Aquifex aeolicus (strain VF5)
P9WK35 6.46e-34 123 42 7 191 1 ribE Riboflavin synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WK34 6.46e-34 123 42 7 191 3 ribE Riboflavin synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65328 6.46e-34 123 42 7 191 3 ribE Riboflavin synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P51961 7.26e-34 123 38 2 199 1 ribE Riboflavin synthase Photobacterium phosphoreum
A5DB51 2.58e-30 115 36 3 195 2 RIB5 Riboflavin synthase Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
P16440 4.81e-30 114 34 2 205 1 ribE Riboflavin synthase Bacillus subtilis (strain 168)
Q2YN92 1.39e-29 112 38 4 193 1 ribE Riboflavin synthase Brucella abortus (strain 2308)
P38145 4.57e-26 103 34 2 195 1 RIB5 Riboflavin synthase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q44680 1.65e-25 102 35 2 185 3 ribE Riboflavin synthase Bacillus amyloliquefaciens
Q06877 7.44e-24 97 33 2 184 1 lumP Lumazine protein Photobacterium leiognathi
P25082 7.51e-24 97 31 2 183 1 luxL Lumazine protein Photobacterium phosphoreum
Q01993 1e-23 97 35 1 185 3 ribE Riboflavin synthase Photobacterium leiognathi

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_10635
Feature type CDS
Gene ribE
Product riboflavin synthase subunit alpha
Location 23399 - 24064 (strand: 1)
Length 666 (nucleotides) / 221 (amino acids)

Contig

Accession ZDB_688
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1025
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00677 Lumazine binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0307 Coenzyme transport and metabolism (H) H Riboflavin synthase alpha chain

Kegg Ortholog Annotation(s)

Protein Sequence

MFTGIVQGKGPVVAIEEKENFRTHTVKFPPDMLAGIETGASVAHNGCCLTVTKIDGDLISFDLVKETLRLTNLGSIKTGDVVNLERAAKYGDEIGGHIMSGHIVTTAEIAKIFVSENNYQIWLRIEDKALMKYILHKGFVGIDGISLTIGDVVNNRFCVHLIPETRERTTLGKKRLGDKVNIELDPQTQAIVDTTERVLAQKMQQLQESLTPPAPTEKPQA

Flanking regions ( +/- flanking 50bp)

GTTTCAGGATAAACTGCATAAATCTATCCGAATACTGACTGGAGATCCGCATGTTTACCGGGATTGTACAAGGCAAAGGCCCCGTCGTCGCCATCGAAGAAAAAGAAAACTTTCGTACTCACACTGTGAAATTCCCGCCTGATATGCTGGCCGGGATAGAAACGGGCGCATCAGTGGCACATAACGGCTGTTGCCTGACAGTCACAAAAATAGACGGGGATTTAATCAGTTTTGATCTGGTTAAGGAAACCTTAAGACTGACCAATCTCGGCAGCATTAAAACCGGGGATGTGGTCAATCTGGAAAGAGCCGCTAAATATGGTGATGAAATCGGCGGACATATTATGTCCGGCCATATTGTCACCACGGCGGAAATTGCCAAGATTTTTGTCTCTGAAAATAATTATCAGATTTGGCTGCGTATCGAAGATAAAGCCCTGATGAAATATATCCTGCATAAAGGTTTTGTCGGCATTGATGGTATCAGCCTGACTATCGGGGATGTGGTGAATAACCGTTTCTGCGTGCATCTGATTCCGGAAACCCGTGAGCGCACCACGCTGGGTAAAAAACGGCTGGGCGATAAAGTGAATATTGAGCTGGATCCGCAGACGCAGGCGATTGTTGATACCACCGAGCGGGTGCTGGCGCAGAAAATGCAGCAGTTGCAGGAAAGCCTGACGCCGCCGGCGCCGACGGAAAAACCACAGGCCTGACTTTATTGAGATAAAAAAATCCGGTACTGATTTTTGTCAGACCGGATTTT