Homologs in group_418

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18770 FBDBKF_18770 42.9 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_16965 EHELCC_16965 42.9 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_18345 NLDBIP_18345 42.9 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_09280 LHKJJB_09280 42.9 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_08830 HKOGLL_08830 42.9 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS13820 F4V73_RS13820 45.2 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator
PMI_RS05690 PMI_RS05690 38.6 Proteus mirabilis HI4320 - TetR family transcriptional regulator

Distribution of the homologs in the orthogroup group_418

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_418

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28815 7.34e-143 398 99 0 197 1 tetC Transposon Tn10 TetC protein Escherichia coli
Q3J6K8 1.58e-06 50 40 1 64 1 acuR Transcriptional regulator AcuR Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q93PU7 4.13e-06 47 30 0 78 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
O31500 6.16e-06 48 44 1 50 4 yerO Uncharacterized HTH-type transcriptional regulator YerO Bacillus subtilis (strain 168)
Q9ZN78 1.67e-05 47 36 0 60 1 arpA A-factor receptor protein Streptomyces griseus
P96676 1.73e-05 47 24 8 161 4 ydeS Uncharacterized HTH-type transcriptional regulator YdeS Bacillus subtilis (strain 168)
P0ACT9 2.63e-05 46 26 3 99 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 2.63e-05 46 26 3 99 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 2.63e-05 46 26 3 99 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 2.63e-05 46 26 3 99 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
Q9R9T9 3.65e-05 46 29 0 78 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
P39897 4.29e-05 46 30 1 93 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
P39601 0.000116 45 36 0 58 4 ywcC Uncharacterized HTH-type transcriptional regulator YwcC Bacillus subtilis (strain 168)
P0ACT2 0.000162 44 38 0 55 4 envR Probable acrEF/envCD operon repressor Escherichia coli (strain K12)
P0ACT3 0.000162 44 38 0 55 3 envR Probable acrEF/envCD operon repressor Escherichia coli O157:H7
O33453 0.000171 44 34 0 63 2 cymR HTH-type transcriptional regulator CymR Pseudomonas putida
P0ACT1 0.000231 43 38 1 62 3 acrR HTH-type transcriptional regulator AcrR Shigella flexneri
P0ACS9 0.000231 43 38 1 62 1 acrR HTH-type transcriptional regulator AcrR Escherichia coli (strain K12)
P0ACT0 0.000231 43 38 1 62 3 acrR HTH-type transcriptional regulator AcrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P40950 0.000512 43 40 0 44 4 yuxN Uncharacterized HTH-type transcriptional regulator YuxN Bacillus subtilis (strain 168)
Q9RAJ1 0.000573 42 39 0 43 4 dhaR HTH-type transcriptional repressor DhaR Mycobacterium sp. (strain GP1)
O34643 0.000596 42 35 0 57 4 yvkB Uncharacterized HTH-type transcriptional regulator YvkB Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_20460
Feature type CDS
Gene tetC
Product tetracyline resistance-associated transcriptional repressor TetC
Location 625 - 1218 (strand: 1)
Length 594 (nucleotides) / 197 (amino acids)

Contig

Accession contig_57
Length 3055 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_418
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19047 TetR/AcrR family transcriptional regulator, repressor of tetCD - -

Protein Sequence

MENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFKNKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK

Flanking regions ( +/- flanking 50bp)

ATCATCATGATACCATAAACATACTGACGGTATGTTATTTTAAATCTATCATGGAAAATAAAAATCATCAACAAGAAAATTTTAAGAGTACCTATCAATCACTGGTTAACTCAGCACGAATATTGTTTGTTGAAAAAGGCTATCAAGCTGTTTCAATAGATGAGATCTCGGGAAAAGCGTTGGTGACCAAAGGTGCCTTTTATCATCACTTTAAAAATAAAAAACAATTACTCAGTGCCTGTTATAAGCAGCAATTAATTATGATTGATGCCTACATCACAACAAAAACTGATTTAACAAATGGTTGGTCTGCCTTAGAAAGTATATTTGAACATTATCTTGATTATATTATTGATAATAATAAAAACCTTATCCCTATCCAAGAAGTGATGCCTATCATTGGTTGGAATGAACTTGAAAAAATTAGCCTTGAATACATTACTGGTAAGGTAAACGCCATTGTCAGCAAATTGATCCAAGAGAACCAACTTAAAGCTTATGATGATGATGTGCTTAAAAACTTACTCAATGGCTGGTTTATGCATATCGCAATACATGCGAAAAACCTAAAAGAGCTTGCCGATAAAAAAGGCCAATTTATTGCTATTTACCGCGGCTTTTTATTGAGCTTGAAAGATAAATAAAATAGATAGGTTTTATTTGAAGCTAAATCTTCTTTATCGTAAAAAATGCC