Homologs in group_2

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26 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00145 FBDBKF_00145 81.0 Morganella morganii S1 - Lysozyme
FBDBKF_12830 FBDBKF_12830 79.1 Morganella morganii S1 - Lysozyme
FBDBKF_13145 FBDBKF_13145 79.1 Morganella morganii S1 - Lysozyme
FBDBKF_18670 FBDBKF_18670 63.3 Morganella morganii S1 - Lysozyme
FBDBKF_19455 FBDBKF_19455 81.0 Morganella morganii S1 - Lysozyme
EHELCC_01400 EHELCC_01400 81.0 Morganella morganii S2 - Lysozyme
EHELCC_07710 EHELCC_07710 100.0 Morganella morganii S2 rrrD Phage-related lysozyme (muramidase), GH24 family
EHELCC_15245 EHELCC_15245 63.3 Morganella morganii S2 - Lysozyme
EHELCC_19490 EHELCC_19490 79.1 Morganella morganii S2 - Lysozyme
NLDBIP_02060 NLDBIP_02060 81.0 Morganella morganii S4 - Lysozyme
NLDBIP_08035 NLDBIP_08035 100.0 Morganella morganii S4 rrrD Phage-related lysozyme (muramidase), GH24 family
NLDBIP_09275 NLDBIP_09275 79.1 Morganella morganii S4 - Lysozyme
NLDBIP_15775 NLDBIP_15775 63.3 Morganella morganii S4 - Lysozyme
NLDBIP_19050 NLDBIP_19050 78.5 Morganella morganii S4 - Lysozyme
LHKJJB_03575 LHKJJB_03575 81.0 Morganella morganii S3 - Lysozyme
LHKJJB_04990 LHKJJB_04990 79.1 Morganella morganii S3 - Lysozyme
LHKJJB_06230 LHKJJB_06230 100.0 Morganella morganii S3 rrrD Phage-related lysozyme (muramidase), GH24 family
LHKJJB_16065 LHKJJB_16065 63.3 Morganella morganii S3 - Lysozyme
LHKJJB_18940 LHKJJB_18940 78.5 Morganella morganii S3 - Lysozyme
HKOGLL_00015 HKOGLL_00015 81.0 Morganella morganii S5 - Lysozyme
HKOGLL_05925 HKOGLL_05925 79.1 Morganella morganii S5 - Lysozyme
HKOGLL_15185 HKOGLL_15185 63.3 Morganella morganii S5 - Lysozyme
HKOGLL_19085 HKOGLL_19085 100.0 Morganella morganii S5 rrrD Phage-related lysozyme (muramidase), GH24 family
F4V73_RS02060 F4V73_RS02060 73.3 Morganella psychrotolerans - lysozyme
PMI_RS02440 PMI_RS02440 59.6 Proteus mirabilis HI4320 - lysozyme
PMI_RS04510 PMI_RS04510 59.6 Proteus mirabilis HI4320 - lysozyme

Distribution of the homologs in the orthogroup group_2

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O80292 2.68e-63 194 56 1 160 3 19 SAR-endolysin Bacteriophage PS119
O80288 1.99e-62 192 56 1 160 3 19 SAR-endolysin Bacteriophage PS34
P78285 4.92e-56 176 56 1 160 1 rrrD Lysozyme RrrD Escherichia coli (strain K12)
P10439 2.15e-55 174 55 1 160 3 15 SAR-endolysin Enterobacteria phage PA-2
P27359 1.01e-53 170 56 0 126 1 R SAR-endolysin Enterobacteria phage P21
Q9T1X2 1.31e-41 139 49 1 125 1 lys SAR-endolysin Escherichia phage Mu
Q6XQ98 2.39e-32 115 39 1 161 3 12 SAR-endolysin Escherichia phage T1
P07540 4.81e-24 97 38 1 133 3 15 Endolysin Bacillus phage PZA
P11187 8.08e-24 96 36 1 139 1 15 Endolysin Bacillus phage phi29
Q9T1T5 2.17e-23 92 39 3 133 3 13 Endolysin Acyrthosiphon pisum secondary endosymbiont phage 1
Q37896 2.89e-23 95 34 1 133 3 15 Endolysin Bacillus phage B103
P68921 3.32e-18 80 32 4 164 3 R SAR-endolysin Enterobacteria phage VT2-Sa
P68920 3.32e-18 80 32 4 164 3 R SAR-endolysin Escherichia phage 933W
Q7Y2C0 4.64e-17 76 33 4 130 1 45 SAR-endolysin Pseudomonas phage phiKMV
Q9ZXB7 6.58e-17 76 31 4 164 3 R SAR-endolysin Enterobacteria phage H19B
O64362 5.47e-16 74 31 4 163 3 54 SAR-endolysin Escherichia phage N15
P76159 1.09e-15 73 31 4 164 3 rrrQ Probable prophage lysozyme Escherichia coli (strain K12)
P09963 3.39e-14 68 31 1 112 1 19 Endolysin Salmonella phage P22
P51728 0.00012 43 25 4 146 3 lys SAR-endolysin Haemophilus phage HP1 (strain HP1c1)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_19905
Feature type CDS
Gene rrrD
Product Phage-related lysozyme (muramidase), GH24 family
Location 3773 - 4249 (strand: -1)
Length 477 (nucleotides) / 158 (amino acids)

Contig

Accession contig_45
Length 15421 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2
Orthogroup size 27
N. genomes 7

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Genomic region

Domains

PF00959 Phage lysozyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3772 Cell wall/membrane/envelope biogenesis (M) M Phage-related lysozyme (muramidase), GH24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01185 lysozyme [EC:3.2.1.17] - -

Protein Sequence

MKNSLSKKVIAAAAGGAISAALVLIPAYEGVEYRPYRDVAGVLTVCYGHTGSDIQAGKIYTADECRALLHRDLDKIRRAVDPMITVPVDDTTRAAIYSFVYNVGPGAFSRSSMLRKLNSGDIAGACEEMKRWTFAGGRQWQGLINRREAESEVCRATL

Flanking regions ( +/- flanking 50bp)

CAATTGGTATTACCGACGGAAAGAGTTTCAGATAAAAGCCGGAGATCACCATGAAGAATAGTCTGAGCAAAAAAGTGATTGCCGCAGCAGCAGGCGGCGCAATTTCTGCCGCTCTGGTGCTGATTCCGGCCTATGAAGGCGTGGAATACCGGCCCTACCGCGATGTGGCCGGGGTGCTGACTGTCTGTTACGGGCATACCGGCAGTGATATTCAGGCAGGAAAGATTTATACGGCGGATGAATGCCGGGCACTATTGCACCGTGATCTGGATAAAATCCGCCGCGCGGTTGATCCGATGATTACGGTTCCTGTGGATGACACCACCCGGGCTGCCATCTATTCCTTTGTTTACAACGTCGGCCCGGGGGCGTTTTCCCGCTCTTCGATGCTGCGAAAACTGAACAGCGGTGATATTGCCGGTGCCTGTGAGGAAATGAAACGCTGGACATTTGCCGGCGGCCGGCAGTGGCAGGGGCTGATTAACCGGCGTGAAGCGGAGAGTGAGGTATGTCGTGCAACCCTGTAGTGCTGATCATTGCCGCGATTCTCATACTGACAGCCTGCCTGCTGGCAGGC