Homologs in group_2

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26 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00145 FBDBKF_00145 61.5 Morganella morganii S1 - Lysozyme
FBDBKF_12830 FBDBKF_12830 62.8 Morganella morganii S1 - Lysozyme
FBDBKF_13145 FBDBKF_13145 62.8 Morganella morganii S1 - Lysozyme
FBDBKF_18670 FBDBKF_18670 55.1 Morganella morganii S1 - Lysozyme
FBDBKF_19455 FBDBKF_19455 63.5 Morganella morganii S1 - Lysozyme
FBDBKF_19905 FBDBKF_19905 59.6 Morganella morganii S1 rrrD Phage-related lysozyme (muramidase), GH24 family
EHELCC_01400 EHELCC_01400 61.5 Morganella morganii S2 - Lysozyme
EHELCC_07710 EHELCC_07710 59.6 Morganella morganii S2 rrrD Phage-related lysozyme (muramidase), GH24 family
EHELCC_15245 EHELCC_15245 55.1 Morganella morganii S2 - Lysozyme
EHELCC_19490 EHELCC_19490 62.8 Morganella morganii S2 - Lysozyme
NLDBIP_02060 NLDBIP_02060 61.5 Morganella morganii S4 - Lysozyme
NLDBIP_08035 NLDBIP_08035 59.6 Morganella morganii S4 rrrD Phage-related lysozyme (muramidase), GH24 family
NLDBIP_09275 NLDBIP_09275 62.8 Morganella morganii S4 - Lysozyme
NLDBIP_15775 NLDBIP_15775 55.1 Morganella morganii S4 - Lysozyme
NLDBIP_19050 NLDBIP_19050 63.5 Morganella morganii S4 - Lysozyme
LHKJJB_03575 LHKJJB_03575 61.5 Morganella morganii S3 - Lysozyme
LHKJJB_04990 LHKJJB_04990 62.8 Morganella morganii S3 - Lysozyme
LHKJJB_06230 LHKJJB_06230 59.6 Morganella morganii S3 rrrD Phage-related lysozyme (muramidase), GH24 family
LHKJJB_16065 LHKJJB_16065 55.1 Morganella morganii S3 - Lysozyme
LHKJJB_18940 LHKJJB_18940 63.5 Morganella morganii S3 - Lysozyme
HKOGLL_00015 HKOGLL_00015 61.5 Morganella morganii S5 - Lysozyme
HKOGLL_05925 HKOGLL_05925 62.8 Morganella morganii S5 - Lysozyme
HKOGLL_15185 HKOGLL_15185 55.1 Morganella morganii S5 - Lysozyme
HKOGLL_19085 HKOGLL_19085 59.6 Morganella morganii S5 rrrD Phage-related lysozyme (muramidase), GH24 family
F4V73_RS02060 F4V73_RS02060 62.2 Morganella psychrotolerans - lysozyme
PMI_RS02440 PMI_RS02440 99.4 Proteus mirabilis HI4320 - lysozyme

Distribution of the homologs in the orthogroup group_2

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O80292 5.89e-57 178 52 1 157 3 19 SAR-endolysin Bacteriophage PS119
O80288 3.38e-53 169 49 1 157 3 19 SAR-endolysin Bacteriophage PS34
P78285 1.01e-48 157 54 0 127 1 rrrD Lysozyme RrrD Escherichia coli (strain K12)
P10439 2.94e-48 156 53 0 127 3 15 SAR-endolysin Enterobacteria phage PA-2
P27359 4.96e-47 153 52 0 127 1 R SAR-endolysin Enterobacteria phage P21
Q9T1X2 1.68e-46 152 49 2 154 1 lys SAR-endolysin Escherichia phage Mu
Q6XQ98 3.77e-37 128 42 1 158 3 12 SAR-endolysin Escherichia phage T1
P68921 5.85e-25 97 38 5 166 3 R SAR-endolysin Enterobacteria phage VT2-Sa
P68920 5.85e-25 97 38 5 166 3 R SAR-endolysin Escherichia phage 933W
O64362 6.39e-24 94 37 4 165 3 54 SAR-endolysin Escherichia phage N15
Q9ZXB7 8.99e-24 94 37 5 166 3 R SAR-endolysin Enterobacteria phage H19B
Q9T1T5 5e-23 91 41 3 136 3 13 Endolysin Acyrthosiphon pisum secondary endosymbiont phage 1
P76159 3.81e-22 90 37 5 166 3 rrrQ Probable prophage lysozyme Escherichia coli (strain K12)
Q37896 6.39e-22 91 40 1 132 3 15 Endolysin Bacillus phage B103
P07540 2.57e-20 87 38 1 134 3 15 Endolysin Bacillus phage PZA
P11187 1.39e-19 85 37 1 134 1 15 Endolysin Bacillus phage phi29
P09963 2.98e-14 68 34 2 129 1 19 Endolysin Salmonella phage P22
Q7Y2C0 1.13e-13 67 34 3 130 1 45 SAR-endolysin Pseudomonas phage phiKMV
P62693 2.49e-08 54 33 5 137 3 L3 Endolysin Lactococcus phage phivML3
P62692 2.49e-08 54 33 5 137 3 L3 Endolysin Lactococcus phage c2
Q37875 4.24e-07 50 26 3 146 1 17 SAR-endolysin Escherichia phage P1
P51728 0.000445 42 26 5 150 3 lys SAR-endolysin Haemophilus phage HP1 (strain HP1c1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04510
Feature type CDS
Gene -
Product lysozyme
Location 1002575 - 1003045 (strand: 1)
Length 471 (nucleotides) / 156 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2
Orthogroup size 27
N. genomes 7

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Genomic region

Domains

PF00959 Phage lysozyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3772 Cell wall/membrane/envelope biogenesis (M) M Phage-related lysozyme (muramidase), GH24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01185 lysozyme [EC:3.2.1.17] - -

Protein Sequence

MSLKQKIAALTTAGATAIALVVIAHFEGVRYEPYRDVAGVLTVCYGHTGKDIIQGKRYTQQECDALLQIDFIKTQQQVDALIKVSLDDYTKAALYSFAFNVGTTAFARSTLLKKLNAGDRAGACEEMKRWIYAGGKVWRGLVSRREAESALCHGNL

Flanking regions ( +/- flanking 50bp)

ACCTTAAAAAAGCTTGCTGAATTAATGGTGAAAGCGCCAAAGGATATTTAATGTCTCTCAAACAGAAAATAGCGGCGCTAACAACAGCAGGAGCAACAGCCATCGCGTTAGTAGTAATAGCCCATTTTGAAGGTGTACGTTATGAACCTTATCGTGATGTGGCAGGTGTTCTAACTGTTTGTTATGGACATACAGGCAAAGACATTATTCAAGGCAAGAGATACACACAACAAGAATGTGATGCGTTATTACAAATCGATTTTATTAAGACACAACAGCAAGTCGATGCATTAATCAAAGTATCACTCGATGACTACACCAAAGCTGCTTTATATTCCTTTGCTTTTAATGTGGGTACAACCGCATTTGCTCGCTCAACATTACTCAAGAAGCTAAACGCTGGTGATAGAGCGGGTGCCTGTGAAGAAATGAAACGTTGGATATATGCAGGCGGAAAGGTCTGGCGAGGGCTTGTCAGTCGTCGAGAAGCGGAGTCAGCACTATGTCATGGAAACCTTTAATCATCATTATCAGCTTTATCCTTGCATTACTCATTACAGTCGCTGGTGGC