Homologs in group_1647

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_05285 EHELCC_05285 100.0 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_05605 NLDBIP_05605 100.0 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_02485 LHKJJB_02485 100.0 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_15865 HKOGLL_15865 100.0 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS08355 F4V73_RS08355 79.2 Morganella psychrotolerans - AraC family transcriptional regulator
PMI_RS09670 PMI_RS09670 47.1 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_1647

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1647

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26993 1.02e-96 288 52 0 262 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A1JU91 3.13e-86 261 53 2 253 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P28808 2e-85 259 53 2 253 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
P0C2V5 3.29e-85 258 53 2 253 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
B1Q2A8 2.63e-10 63 36 2 100 1 nphR Transcriptional activator NphR Rhodococcus sp.
O33813 2.08e-09 60 22 5 269 4 lacR Lactose operon transcription activator Staphylococcus xylosus
O31249 7.68e-08 55 28 0 85 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q52620 1.31e-07 52 32 0 84 4 pqrA Probable transcription factor PqrA Proteus vulgaris
A7ZUB7 3.84e-07 53 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
Q9HTH5 4.26e-07 53 31 0 104 1 cdhR HTH-type transcriptional regulator CdhR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q05587 4.41e-07 53 26 0 92 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5XZ49 4.81e-07 53 23 1 135 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
Q84BZ4 5.5e-07 53 25 1 135 4 andR Anthranilate 1,2-dioxygenase regulatory protein Burkholderia cepacia
A6TGA9 5.95e-07 53 23 1 135 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B6I4P8 6.78e-07 53 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
P07642 7.11e-07 53 27 3 137 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
Q83PE0 7.65e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 7.65e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q1R414 8.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 8.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 8.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 8.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 8.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
Q32A70 8.63e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
B5YZ43 8.63e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 8.63e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
Q31U84 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 8.79e-07 52 23 0 95 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 8.79e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B1LMU6 9.04e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
P45008 9.2e-07 52 23 6 189 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8CXW5 9.38e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q3YV71 9.47e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
Q0TAF8 9.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 9.55e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B7N2P7 9.64e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
Q46855 1.42e-06 52 26 0 111 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
O31522 1.56e-06 52 30 2 116 2 yesS HTH-type transcriptional regulator YesS Bacillus subtilis (strain 168)
P77379 1.64e-06 52 24 4 149 1 rclR RCS-specific HTH-type transcriptional activator RclR Escherichia coli (strain K12)
Q65Q30 2.6e-06 51 23 1 130 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9HTI4 3.31e-06 51 28 0 97 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 3.31e-06 51 28 0 97 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
B2TVP7 5.29e-06 50 22 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q65Q31 6.77e-06 50 19 0 102 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A4WG91 7.58e-06 49 22 0 96 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
T2KMF4 1.12e-05 50 34 0 76 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
A8AL27 1.29e-05 49 22 1 113 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B4TPQ9 1.75e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B7LVD8 2.11e-05 48 22 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
P17410 2.2e-05 48 38 0 59 1 chbR HTH-type transcriptional regulator ChbR Escherichia coli (strain K12)
B5F0M9 2.42e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
B5BJG8 2.46e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 2.46e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5FPP5 2.46e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
B4TBY3 2.56e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
P0A2S9 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 2.58e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
Q9WW32 2.59e-05 48 24 1 126 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
Q57HG8 2.83e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
H9L484 2.84e-05 45 26 0 82 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MI64 3.22e-05 48 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P0A2T3 3.43e-05 47 28 1 119 3 virF Virulence regulon transcriptional activator VirF Shigella sonnei
P0A2T1 3.43e-05 47 28 1 119 2 virF Virulence regulon transcriptional activator VirF Shigella flexneri
P0A2T2 3.43e-05 47 28 1 119 3 virF Virulence regulon transcriptional activator VirF Shigella dysenteriae
Q48413 5.91e-05 45 29 1 86 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 5.91e-05 45 29 1 86 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
P40883 9.15e-05 46 28 1 81 2 pchR Regulatory protein PchR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P43464 0.000126 46 30 1 96 4 aggR Transcriptional activator AggR Escherichia coli
G3XCU2 0.00014 46 27 0 92 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28816 0.000161 44 29 0 85 1 tetD Transposon Tn10 TetD protein Escherichia coli
Q00753 0.000167 45 23 0 96 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P0ACI2 0.000258 45 29 0 92 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 0.000258 45 29 0 92 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 0.000258 45 29 0 92 3 rob Right origin-binding protein Escherichia coli O157:H7
P96662 0.000258 45 25 0 98 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
Q6GKK1 0.000288 45 22 0 105 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q8ZJU7 0.000392 44 29 0 92 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O31449 0.000398 44 26 1 90 4 ybfI Uncharacterized HTH-type transcriptional regulator YbfI Bacillus subtilis (strain 168)
P0A9E0 0.000515 44 24 1 134 1 araC Arabinose operon regulatory protein Escherichia coli (strain K12)
P0A9E1 0.000515 44 24 1 134 3 araC Arabinose operon regulatory protein Escherichia coli O157:H7
P0ACI3 0.000528 44 23 0 105 1 xylR Xylose operon regulatory protein Escherichia coli (strain K12)
P0ACI4 0.000528 44 23 0 105 3 xylR Xylose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACI5 0.000528 44 23 0 105 3 xylR Xylose operon regulatory protein Escherichia coli O157:H7
Q6GD21 0.000564 44 22 0 105 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 0.000564 44 22 0 105 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 0.000595 44 22 0 105 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 0.000595 44 22 0 105 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q51872 0.000667 43 30 1 103 4 lumQ Probable transcriptional regulator LumQ Photobacterium leiognathi
Q936F1 0.000681 44 22 0 105 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
Q5HJR8 0.000725 44 22 0 105 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
Q32A71 0.000793 43 25 2 113 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
P09378 0.000877 43 26 1 88 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 0.000877 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 0.000877 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q8X7B3 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
Q1R413 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q83PD9 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q31U83 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 0.001 43 26 1 88 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_10940
Feature type CDS
Gene araC
Product AraC-type DNA-binding domain and AraC-containing proteins
Location 13276 - 14100 (strand: -1)
Length 825 (nucleotides) / 274 (amino acids)

Contig

Accession contig_13
Length 135581 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1647
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain
PF22200 ExsA N-terminal regulatory domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20968 AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MNSRTLTSDNNKEIQSVIVEPDIFNITEQQEKGLYLLMSGKMKWQDCINSYTLNDNEVIFSNQGSYAYQHISGEINLLWVPLNNHFLRDFLHRFSDTLSHLHRVTDPTSGLIYFPQSAMLKNSISGFYDAYCNNAPSPLIKLKLEELLLIIALSEEGTRLMSVLRQLSNRQAERLQSFMEKHYLKDWKLNEFSREFGMGLTTFKELFGSVYGTSPRAWISERRLLFSHQLLLNTQMSIVDVSMEAGFSSQSYFTQSYRKRFGFTPSKARGNHIN

Flanking regions ( +/- flanking 50bp)

TGTTATTTAATTTCCGAAAATTAAGCCATATTGTTCACTCTGAGATGCCCATGAACTCACGTACTTTGACATCTGACAATAATAAAGAGATACAATCTGTTATTGTTGAGCCCGATATTTTCAATATTACCGAACAACAGGAAAAAGGTCTTTACCTTCTGATGTCCGGAAAAATGAAATGGCAGGATTGCATAAACTCATACACACTTAATGACAATGAAGTTATTTTCTCCAATCAGGGAAGCTATGCATACCAGCATATTTCCGGCGAAATTAACTTATTATGGGTTCCGCTGAACAACCATTTTCTGCGGGATTTTCTTCACCGTTTTTCTGATACTCTCAGCCACCTTCACCGTGTTACTGATCCGACATCCGGACTCATTTATTTTCCGCAGTCCGCTATGCTGAAAAACAGTATCAGCGGGTTTTATGATGCTTATTGTAATAATGCGCCATCACCGCTGATAAAGCTGAAGCTGGAGGAATTATTATTAATTATCGCCCTGAGTGAAGAAGGCACACGTCTGATGTCGGTATTGCGTCAGCTGAGTAACCGCCAGGCAGAACGTTTGCAGAGCTTCATGGAAAAGCACTATCTGAAAGACTGGAAGTTAAATGAATTTTCCAGAGAATTTGGTATGGGCCTGACAACATTCAAAGAGCTGTTCGGCTCGGTATACGGTACATCTCCGCGGGCATGGATAAGCGAACGGCGGTTATTATTTTCTCATCAGCTTCTGCTTAATACCCAGATGAGTATCGTTGATGTCTCAATGGAAGCAGGGTTCTCAAGTCAGTCGTATTTTACCCAGAGCTACCGTAAGCGTTTCGGATTTACGCCCAGCAAAGCCCGGGGTAATCATATAAACTGACGAATTGTGATAAAAACAGAAAACAAAAATAATACCGGAAAAAAACGGGT