Homologs in group_1487

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_04395 EHELCC_04395 100.0 Morganella morganii S2 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
NLDBIP_04395 NLDBIP_04395 100.0 Morganella morganii S4 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
LHKJJB_14235 LHKJJB_14235 100.0 Morganella morganii S3 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
HKOGLL_12300 HKOGLL_12300 100.0 Morganella morganii S5 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
F4V73_RS00745 F4V73_RS00745 90.7 Morganella psychrotolerans yvcK uridine diphosphate-N-acetylglucosamine-binding protein YvcK
PMI_RS03000 PMI_RS03000 67.9 Proteus mirabilis HI4320 yvcK uridine diphosphate-N-acetylglucosamine-binding protein YvcK

Distribution of the homologs in the orthogroup group_1487

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1487

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P58586 3.33e-145 413 69 0 301 3 ybhK Putative gluconeogenesis factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P58587 1.43e-144 411 69 0 301 3 ybhK Putative gluconeogenesis factor Salmonella typhi
P58585 4.46e-144 410 69 0 301 3 ybhK Putative gluconeogenesis factor Escherichia coli O157:H7
P75767 7.85e-143 407 68 0 301 1 ybhK Putative gluconeogenesis factor Escherichia coli (strain K12)
P58589 2.05e-141 404 69 0 301 3 YPO1158 Putative gluconeogenesis factor Yersinia pestis
Q9CN20 3.95e-108 319 54 3 293 3 PM0626 Putative gluconeogenesis factor Pasteurella multocida (strain Pm70)
Q9KT82 4.63e-100 298 53 5 297 3 VC_1023 Putative gluconeogenesis factor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P58588 4.65e-41 147 30 6 317 3 lmo2473 Gluconeogenesis factor Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q9CGY0 2.21e-38 141 32 6 287 3 yjiF Putative gluconeogenesis factor Lactococcus lactis subsp. lactis (strain IL1403)
Q928C0 5.63e-37 137 32 4 270 3 lin2616 Gluconeogenesis factor Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9RUF1 3.49e-36 138 35 7 252 3 DR_1435 Putative gluconeogenesis factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q55575 2.32e-35 135 34 2 230 3 sll0154 Putative gluconeogenesis factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0DG79 5.3e-35 132 29 4 249 3 SPs1392 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain SSI-1)
Q8P1T7 5.3e-35 132 29 4 249 3 spyM18_0714 Putative gluconeogenesis factor Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XD18 5.3e-35 132 29 4 249 3 M6_Spy0560 Putative gluconeogenesis factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DG78 5.3e-35 132 29 4 249 3 SpyM3_0463 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q9A0R7 9.64e-35 131 30 5 251 3 SPy_0653 Putative gluconeogenesis factor Streptococcus pyogenes serotype M1
O66974 1.13e-34 131 37 5 224 3 aq_778 Putative gluconeogenesis factor Aquifex aeolicus (strain VF5)
O52750 1.42e-33 130 31 3 259 3 alr2298 Putative gluconeogenesis factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P9WMU5 4.76e-33 127 34 5 229 1 Rv1422 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU4 4.76e-33 127 34 5 229 3 MT1465 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CCN9 5.43e-33 127 34 5 226 3 ML0564 Putative gluconeogenesis factor Mycobacterium leprae (strain TN)
Q9X235 4.74e-32 124 35 2 214 3 TM_1709 Putative gluconeogenesis factor Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q97LP2 1.8e-30 122 30 6 273 3 CA_C0512 Putative gluconeogenesis factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q9K706 4.6e-30 119 32 1 215 1 BH3568 Gluconeogenesis factor Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O06974 3.68e-29 116 29 4 272 3 mgfK Gluconeogenesis factor Bacillus subtilis (strain 168)
P38541 8.67e-29 115 33 5 229 3 None Putative gluconeogenesis factor Thermoanaerobacterium thermosulfurigenes
Q97PN8 1.62e-28 114 28 6 255 1 SP_1565 Putative gluconeogenesis factor Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_09595
Feature type CDS
Gene cofD
Product Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
Location 16468 - 17376 (strand: 1)
Length 909 (nucleotides) / 302 (amino acids)

Contig

Accession contig_11
Length 143616 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1487
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01933 2-phospho-L-lactate transferase CofD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0391 Carbohydrate transport and metabolism (G)
Coenzyme transport and metabolism (H)		 GH Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family

Protein Sequence

MGNRTLTSLEHVVALGGGHGLGRVMSCLNGLGSRLTGVVTTTDNGGSTGRIRRAEGGIAWGDMRNCLNQMITEPSIASTMFEYRFSGNGELAGHNLGNLMLKALDHMSVRPLDAINLIRNMLKVKAKLIPMSETPVDLMAIDSEGHEVYGEVNVDQLTCPPQELQLSPPVKTTKEALDAICRAELIIIGPGSFFTSLMPLMLLPDFTKAINFNQAPMIYIENLGKELSPAAASLSLSEKIAVIESRIGRKRIDAVVCAPHINTGDLGDRLIVREVLEAQDVPYRHDRRLLLSALDKTIALLP

Flanking regions ( +/- flanking 50bp)

ATAGATTACCGCGCAAATAAATATGAAAACTCAGGGAATGCATAAACACTATGGGAAACCGCACACTCACGTCGCTGGAACATGTTGTTGCTTTAGGCGGAGGCCACGGGCTGGGACGGGTGATGTCCTGCCTGAACGGTTTGGGATCGCGGCTGACCGGCGTGGTCACCACCACGGATAACGGCGGTTCCACCGGCCGGATCCGCCGGGCGGAGGGCGGCATTGCCTGGGGTGATATGCGCAACTGTCTCAATCAGATGATCACGGAGCCGTCGATTGCCTCCACCATGTTTGAATACCGTTTCAGCGGTAACGGCGAACTGGCGGGACATAACCTCGGCAACCTGATGCTCAAGGCGCTGGATCATATGAGTGTGCGTCCGCTGGATGCGATCAATCTGATCCGCAATATGCTGAAAGTCAAAGCCAAATTGATCCCGATGTCGGAAACGCCGGTCGACCTGATGGCTATCGACAGTGAAGGCCATGAAGTGTACGGCGAAGTGAATGTCGATCAGCTGACCTGCCCGCCGCAGGAGTTACAGCTCTCCCCGCCGGTGAAAACCACCAAAGAGGCGCTGGATGCCATCTGCCGCGCAGAACTGATTATTATCGGGCCGGGCAGTTTTTTTACCAGCCTGATGCCGCTGATGCTGCTGCCCGATTTCACCAAAGCCATTAATTTTAATCAGGCGCCGATGATCTATATTGAGAATCTCGGCAAAGAACTGAGCCCGGCAGCGGCATCACTCAGCCTGAGTGAAAAAATCGCCGTGATCGAGAGCCGCATCGGGCGCAAACGGATAGATGCAGTAGTGTGTGCACCACATATCAATACCGGCGACCTCGGCGACCGACTGATTGTCAGAGAGGTTCTGGAGGCACAGGATGTACCGTACCGCCATGACCGCCGCCTGCTGCTGAGTGCGCTGGATAAAACAATCGCCCTGCTGCCCTGATCCCGTCAGGAGTTGGCAATAAACTGCTCACGCAGCCCCTGTAATTCATC