Homologs in group_1487

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09595 FBDBKF_09595 90.7 Morganella morganii S1 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
EHELCC_04395 EHELCC_04395 90.7 Morganella morganii S2 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
NLDBIP_04395 NLDBIP_04395 90.7 Morganella morganii S4 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
LHKJJB_14235 LHKJJB_14235 90.7 Morganella morganii S3 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
HKOGLL_12300 HKOGLL_12300 90.7 Morganella morganii S5 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
PMI_RS03000 PMI_RS03000 68.2 Proteus mirabilis HI4320 yvcK uridine diphosphate-N-acetylglucosamine-binding protein YvcK

Distribution of the homologs in the orthogroup group_1487

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1487

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P58586 1.3e-145 414 69 0 301 3 ybhK Putative gluconeogenesis factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P58587 6.22e-145 412 69 0 301 3 ybhK Putative gluconeogenesis factor Salmonella typhi
P58585 2.76e-144 410 69 0 301 3 ybhK Putative gluconeogenesis factor Escherichia coli O157:H7
P75767 1.12e-143 409 68 0 301 1 ybhK Putative gluconeogenesis factor Escherichia coli (strain K12)
P58589 2.04e-138 396 68 0 301 3 YPO1158 Putative gluconeogenesis factor Yersinia pestis
Q9CN20 2.64e-110 325 54 3 293 3 PM0626 Putative gluconeogenesis factor Pasteurella multocida (strain Pm70)
Q9KT82 3.14e-104 309 55 5 296 3 VC_1023 Putative gluconeogenesis factor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P58588 4e-45 158 34 4 270 3 lmo2473 Gluconeogenesis factor Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q928C0 6.32e-41 147 34 4 270 3 lin2616 Gluconeogenesis factor Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q55575 1.85e-38 144 36 1 224 3 sll0154 Putative gluconeogenesis factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9RUF1 2.35e-38 144 32 9 323 3 DR_1435 Putative gluconeogenesis factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9CGY0 6.27e-38 139 31 5 286 3 yjiF Putative gluconeogenesis factor Lactococcus lactis subsp. lactis (strain IL1403)
O66974 1.62e-36 136 37 5 221 3 aq_778 Putative gluconeogenesis factor Aquifex aeolicus (strain VF5)
Q9A0R7 1.94e-35 133 32 4 231 3 SPy_0653 Putative gluconeogenesis factor Streptococcus pyogenes serotype M1
P0DG79 1.98e-35 133 31 3 229 3 SPs1392 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain SSI-1)
Q8P1T7 1.98e-35 133 31 3 229 3 spyM18_0714 Putative gluconeogenesis factor Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XD18 1.98e-35 133 31 3 229 3 M6_Spy0560 Putative gluconeogenesis factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DG78 1.98e-35 133 31 3 229 3 SpyM3_0463 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
O52750 5.41e-35 134 32 3 258 3 alr2298 Putative gluconeogenesis factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P9WMU5 3.56e-34 130 30 7 291 1 Rv1422 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU4 3.56e-34 130 30 7 291 3 MT1465 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q97PN8 4.8e-33 127 29 4 253 1 SP_1565 Putative gluconeogenesis factor Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q9CCN9 7.81e-33 127 33 4 224 3 ML0564 Putative gluconeogenesis factor Mycobacterium leprae (strain TN)
Q9K706 2.2e-32 125 33 1 215 1 BH3568 Gluconeogenesis factor Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O06974 2.96e-32 124 30 4 272 3 mgfK Gluconeogenesis factor Bacillus subtilis (strain 168)
Q97LP2 3.92e-32 127 31 5 262 3 CA_C0512 Putative gluconeogenesis factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q9X235 1.66e-31 122 33 5 260 3 TM_1709 Putative gluconeogenesis factor Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P38541 6.27e-30 118 34 5 229 3 None Putative gluconeogenesis factor Thermoanaerobacterium thermosulfurigenes
O27097 5.62e-05 47 30 2 98 3 cofD 2-phospho-L-lactate transferase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00745
Feature type CDS
Gene yvcK
Product uridine diphosphate-N-acetylglucosamine-binding protein YvcK
Location 156242 - 157150 (strand: -1)
Length 909 (nucleotides) / 302 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1487
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01933 2-phospho-L-lactate transferase CofD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0391 Carbohydrate transport and metabolism (G)
Coenzyme transport and metabolism (H)		 GH Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family

Protein Sequence

MENRTLTSLEHVVALGGGHGLGRVMSCLNVLGSRLTGVVTTTDNGGSTGRIRRAEGGIAWGDMRNCLNQMITEPSIASTMFEYRFSGNGELSGHNLGNLILKALDNMSVRPLDAINLIRNMLKVRAKLIPMSETPVDLMAIDNEGNEVYGEVNVDQLRFPPQELQLFPSVKATKEALDAISRADLIIIGPGSFFTSLMPLMLLPDFTKAINFNQAPMIYIENLGKELSPAAASLSLSEKIAVIERRIGRPRIDAVLCAPHIDTNDVRDRLIVKEVLEAQDVPYRHDRQLLSDALNKTISLLP

Flanking regions ( +/- flanking 50bp)

GTAGATTACCGCGCAAATAAATACAAAGGCTCAGGGAATACATAAACACGATGGAAAACCGCACACTCACTTCGCTGGAACATGTTGTTGCTTTAGGCGGAGGTCATGGCCTGGGTCGGGTGATGTCCTGCCTTAATGTTCTGGGATCGCGGTTAACCGGTGTGGTGACAACGACAGACAACGGCGGATCAACCGGGCGTATCCGCCGTGCTGAGGGCGGAATTGCGTGGGGTGATATGCGTAACTGCCTGAATCAGATGATAACTGAGCCTTCTATTGCTTCGACAATGTTTGAATACCGTTTCAGCGGTAACGGCGAGCTGTCAGGTCACAATCTCGGGAATCTGATCCTCAAAGCCCTTGATAATATGAGTGTTCGTCCGCTGGATGCTATTAATCTCATCCGTAATATGCTGAAAGTAAGAGCGAAGCTTATCCCGATGTCAGAAACACCGGTTGATTTGATGGCGATTGATAACGAAGGCAATGAAGTTTACGGCGAAGTGAATGTTGATCAGTTGCGCTTTCCGCCGCAGGAATTACAGCTTTTCCCGTCGGTCAAAGCCACAAAAGAAGCGCTGGATGCCATAAGCCGCGCTGACCTGATTATCATCGGACCGGGCAGTTTTTTTACCAGCCTGATGCCGCTGATGCTGCTACCTGATTTTACTAAAGCCATTAATTTCAATCAGGCGCCGATGATCTATATTGAGAACCTGGGTAAAGAGCTCAGCCCGGCGGCGGCGTCACTCTCCCTGAGTGAGAAAATTGCCGTCATCGAGCGCCGTATCGGGCGCCCGCGTATTGATGCGGTTCTCTGTGCGCCGCATATTGATACCAACGATGTCCGCGACCGGCTGATAGTCAAAGAGGTACTGGAAGCACAGGATGTGCCGTACCGCCATGACCGTCAGTTGTTGTCGGACGCACTGAACAAAACTATCAGCCTGCTGCCGTGATCAGGAATTGGCAATAAACAGCATACGCAAAGCCTGTAACTGATCACGCA