Homologs in group_1487

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09595 FBDBKF_09595 67.9 Morganella morganii S1 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
EHELCC_04395 EHELCC_04395 67.9 Morganella morganii S2 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
NLDBIP_04395 NLDBIP_04395 67.9 Morganella morganii S4 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
LHKJJB_14235 LHKJJB_14235 67.9 Morganella morganii S3 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
HKOGLL_12300 HKOGLL_12300 67.9 Morganella morganii S5 cofD Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family
F4V73_RS00745 F4V73_RS00745 68.2 Morganella psychrotolerans yvcK uridine diphosphate-N-acetylglucosamine-binding protein YvcK

Distribution of the homologs in the orthogroup group_1487

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1487

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P58586 2.76e-150 426 73 0 302 3 ybhK Putative gluconeogenesis factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P58587 1.26e-149 424 72 0 302 3 ybhK Putative gluconeogenesis factor Salmonella typhi
P58585 2.13e-148 421 71 0 302 3 ybhK Putative gluconeogenesis factor Escherichia coli O157:H7
P58589 5.9e-148 421 74 0 301 3 YPO1158 Putative gluconeogenesis factor Yersinia pestis
P75767 1.13e-147 419 70 0 302 1 ybhK Putative gluconeogenesis factor Escherichia coli (strain K12)
Q9CN20 2.24e-116 340 56 3 298 3 PM0626 Putative gluconeogenesis factor Pasteurella multocida (strain Pm70)
Q9KT82 2.66e-101 301 53 4 296 3 VC_1023 Putative gluconeogenesis factor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P58588 1.08e-42 152 35 5 259 3 lmo2473 Gluconeogenesis factor Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
O66974 2.12e-40 146 34 7 283 3 aq_778 Putative gluconeogenesis factor Aquifex aeolicus (strain VF5)
P9WMU5 3.29e-40 146 33 5 289 1 Rv1422 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU4 3.29e-40 146 33 5 289 3 MT1465 Putative gluconeogenesis factor Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CGY0 4.94e-39 143 31 3 254 3 yjiF Putative gluconeogenesis factor Lactococcus lactis subsp. lactis (strain IL1403)
Q9CCN9 1.55e-38 142 38 4 224 3 ML0564 Putative gluconeogenesis factor Mycobacterium leprae (strain TN)
Q9K706 2.49e-38 141 31 2 259 1 BH3568 Gluconeogenesis factor Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q928C0 2.85e-38 140 35 5 259 3 lin2616 Gluconeogenesis factor Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q55575 9.27e-38 142 32 3 257 3 sll0154 Putative gluconeogenesis factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9A0R7 5.78e-37 137 31 4 240 3 SPy_0653 Putative gluconeogenesis factor Streptococcus pyogenes serotype M1
Q97LP2 9.34e-37 139 30 5 271 3 CA_C0512 Putative gluconeogenesis factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
O06974 2.47e-36 135 29 2 260 3 mgfK Gluconeogenesis factor Bacillus subtilis (strain 168)
O52750 9.02e-36 137 32 7 309 3 alr2298 Putative gluconeogenesis factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P0DG79 1.34e-35 134 30 4 240 3 SPs1392 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain SSI-1)
Q8P1T7 1.34e-35 134 30 4 240 3 spyM18_0714 Putative gluconeogenesis factor Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XD18 1.34e-35 134 30 4 240 3 M6_Spy0560 Putative gluconeogenesis factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DG78 1.34e-35 134 30 4 240 3 SpyM3_0463 Putative gluconeogenesis factor Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q9RUF1 9.82e-35 134 34 7 260 3 DR_1435 Putative gluconeogenesis factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9X235 3.61e-33 127 32 5 261 3 TM_1709 Putative gluconeogenesis factor Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P38541 7.06e-32 124 35 5 229 3 None Putative gluconeogenesis factor Thermoanaerobacterium thermosulfurigenes
Q97PN8 3.7e-30 119 28 5 259 1 SP_1565 Putative gluconeogenesis factor Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
A2SPS3 0.000228 45 32 5 131 3 cofD 2-phospho-L-lactate transferase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
O27097 0.000341 45 26 3 115 3 cofD 2-phospho-L-lactate transferase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03000
Feature type CDS
Gene yvcK
Product uridine diphosphate-N-acetylglucosamine-binding protein YvcK
Location 662443 - 663378 (strand: -1)
Length 936 (nucleotides) / 311 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1487
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01933 2-phospho-L-lactate transferase CofD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0391 Carbohydrate transport and metabolism (G)
Coenzyme transport and metabolism (H)		 GH Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family

Protein Sequence

MRNRTLSDLDRVVALGGGHGLGRVLSALSYLGTRLTGIVTTTDNGGSTGRIRKDEGGIAWGDMRNCINQLITEPSVASAMFEYRFSGTGELAGHNLGNLMLKALDNLSVRPLEAINLIRGLLRVNAHLIPMSEQAVDLMAIDDEGNEIYGEVNVDNLPRMPRQLKLYPDVTTTREAIEAIEQADLILIGPGSFFTSLMPLLLLPDLAKALRRSSATTIYIGNLGKELSPAAASMTMSDKIAMMETYIGLQTIDAVIISPETQYESMKGRLIVQAQLEAKDIPYRHDRHLLSKAIELTLQQLGQRNTACTAS

Flanking regions ( +/- flanking 50bp)

TATAATTGTGATAAATTAGCGGCAAATTTTTAAAAGTGAGTAAGACAATTATGCGAAATCGCACGCTAAGTGATTTAGATCGTGTTGTAGCCCTTGGTGGAGGTCATGGCCTTGGACGTGTGCTTTCAGCACTCTCCTATTTAGGAACTCGCCTTACGGGGATTGTCACGACAACAGATAATGGTGGCTCCACGGGACGTATTCGTAAAGACGAAGGCGGTATCGCGTGGGGAGATATGCGCAATTGTATTAATCAATTAATCACAGAGCCTTCCGTTGCTTCTGCGATGTTTGAATACCGTTTCTCAGGCACGGGAGAGCTTGCTGGACACAACTTAGGTAATCTTATGCTAAAGGCCTTAGATAACTTAAGCGTTCGCCCATTAGAAGCAATTAATCTTATCCGCGGTCTACTTAGAGTCAATGCTCATCTTATTCCTATGTCAGAACAAGCGGTTGATTTAATGGCCATTGATGATGAAGGAAATGAAATCTATGGCGAGGTCAATGTAGATAATTTACCGAGGATGCCTCGTCAATTAAAACTCTATCCAGACGTCACCACCACACGAGAAGCCATTGAAGCCATTGAGCAAGCTGATTTAATTTTAATTGGCCCGGGCAGTTTTTTTACCAGTTTGATGCCTTTATTGTTGCTACCTGATTTAGCTAAAGCATTACGTCGTAGCAGTGCCACTACTATTTATATTGGTAATTTAGGTAAAGAGCTTAGCCCTGCGGCTGCAAGTATGACGATGTCAGATAAAATCGCCATGATGGAAACCTATATTGGCTTACAAACTATTGATGCTGTGATTATTAGTCCAGAAACACAATATGAATCAATGAAAGGACGATTAATTGTTCAAGCGCAATTAGAGGCGAAAGATATTCCTTACCGTCATGATAGGCACCTATTAAGTAAAGCTATTGAATTAACACTTCAGCAATTAGGTCAACGTAATACCGCTTGTACAGCGAGTTAATCGTTATACCAATCAAAAAACCGCACTAAAATCATTATCTATCTCAGTGC