Homologs in group_2790

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_10470 EHELCC_10470 100.0 Morganella morganii S2 nikA nickel ABC transporter substrate-binding protein
NLDBIP_10815 NLDBIP_10815 100.0 Morganella morganii S4 nikA nickel ABC transporter substrate-binding protein
LHKJJB_10540 LHKJJB_10540 100.0 Morganella morganii S3 nikA nickel ABC transporter substrate-binding protein
HKOGLL_13600 HKOGLL_13600 100.0 Morganella morganii S5 nikA nickel ABC transporter substrate-binding protein
PMI_RS14570 PMI_RS14570 43.2 Proteus mirabilis HI4320 nikA nickel ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_2790

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2790

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33590 0.0 694 61 0 521 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
A0A0H3JTL0 5.05e-107 332 33 8 533 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2FVE7 1.45e-106 331 33 8 533 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P33950 3.35e-37 147 25 12 479 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P06109 4.09e-34 139 27 8 452 3 xp55 Protein XP55 Streptomyces lividans
P23847 5.9e-33 135 24 12 524 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
A0A0H2ZGW2 9.34e-33 134 26 11 471 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HVS4 1.58e-32 134 27 12 470 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZI72 5.76e-32 132 26 14 468 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
A0A0H2ZGV2 1.62e-31 131 27 15 534 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
A0A0H2ZGV7 4.89e-31 129 26 13 475 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q5PGP4 9.41e-31 128 27 14 443 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z863 1.22e-29 125 26 14 443 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
Q8ZQM3 2.19e-29 124 26 14 443 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57RB1 2.37e-29 124 26 14 443 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
Q32IB6 4.02e-29 124 25 16 506 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
Q1RE95 2.49e-28 121 25 16 506 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 2.49e-28 121 25 16 506 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 2.49e-28 121 25 16 506 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q0TJL8 2.66e-28 121 25 16 506 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q8X6V9 2.87e-28 121 25 16 506 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
P75797 4.34e-28 120 25 16 506 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q821B3 1.04e-27 119 25 16 506 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q3Z3V3 1.09e-27 119 25 16 506 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
Q323W4 1.21e-27 119 25 16 506 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q0T6D2 5.03e-26 114 25 16 507 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
P42061 9.63e-25 111 26 15 459 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
Q6D3B0 2.65e-24 109 24 15 463 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A0A0H2ZGN2 2.17e-23 107 25 15 528 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
P76128 2.53e-23 106 24 12 469 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
Q9HVS1 2.09e-22 103 25 16 516 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q2G2P5 5.51e-22 102 24 22 497 1 nikA Nickel-binding protein NikA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P26906 1.77e-21 101 23 11 487 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
P77348 2.31e-20 97 26 18 486 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
Q46863 5.63e-20 96 25 13 496 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
P23843 6.18e-20 96 24 16 499 1 oppA Periplasmic oligopeptide-binding protein OppA Escherichia coli (strain K12)
P71370 8.42e-19 93 24 22 490 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8YDG6 3.03e-18 91 26 14 373 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P06202 4.59e-18 90 23 19 513 1 oppA Periplasmic oligopeptide-binding protein OppA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q2YJK2 5.1e-18 90 26 14 373 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 5.1e-18 90 26 14 373 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
Q8FUX2 8.34e-18 89 24 21 540 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
Q47622 3.54e-17 88 23 18 556 3 sapA Probable ABC transporter periplasmic-binding protein SapA Escherichia coli (strain K12)
P36634 5.11e-16 84 21 12 570 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45285 5.13e-16 84 22 19 526 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8FWN7 4.65e-14 78 24 20 502 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 4.65e-14 78 24 20 502 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 4.65e-14 78 24 20 502 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 4.65e-14 78 24 20 502 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q8YBP0 5.08e-14 78 24 20 502 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q02VA9 1.75e-13 76 25 15 360 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. cremoris (strain SK11)
Q07741 1.17e-12 73 24 13 359 1 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis
P66772 8.69e-12 71 25 11 320 3 BQ2027_MB1311C Uncharacterized protein Mb1311c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGU5 8.69e-12 71 25 11 320 1 Rv1280c Uncharacterized protein Rv1280c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGU4 8.69e-12 71 25 11 320 3 MT1317 Uncharacterized protein MT1317 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CEK0 6.69e-11 68 24 12 357 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis (strain IL1403)
P55669 8.7e-11 68 25 19 401 3 NGR_a01440 Probable peptide ABC transporter periplasmic-binding protein y4tO Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P24141 1.49e-10 67 23 15 486 1 oppA Oligopeptide-binding protein OppA Bacillus subtilis (strain 168)
P33913 5.32e-10 65 23 19 510 1 yejA Uncharacterized protein YejA Escherichia coli (strain K12)
Q9RU24 2.78e-09 63 23 16 388 1 DR_1571 Probable ABC transporter-binding protein DR_1571 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
A2RI74 3.32e-09 63 24 24 472 1 dppA Dipeptide-binding protein Lactococcus lactis subsp. cremoris (strain MG1363)
P55691 1.62e-05 51 18 14 520 3 NGR_a00920 Uncharacterized protein y4wM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q2YKJ5 2.52e-05 50 20 16 505 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 2.52e-05 50 20 16 505 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q8YC41 3.19e-05 50 20 16 505 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P31306 0.000149 48 25 8 227 1 sarA Oligopeptide-binding protein SarA Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
A9CKL4 0.000168 48 19 17 522 3 yejA Probable peptide-binding protein YejA Agrobacterium fabrum (strain C58 / ATCC 33970)
Q8FW84 0.000177 48 19 13 419 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
P44572 0.000217 47 22 20 459 3 HI_0213 Putative binding protein HI_0213 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A4G1 0.000564 46 22 8 238 1 aliB Oligopeptide-binding protein AliB Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4G0 0.000564 46 22 8 238 3 aliB Oligopeptide-binding protein AliB Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P35592 0.000786 45 24 5 174 3 aliA Oligopeptide-binding protein AliA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_08940
Feature type CDS
Gene nikA
Product nickel ABC transporter substrate-binding protein
Location 5110 - 6684 (strand: -1)
Length 1575 (nucleotides) / 524 (amino acids)

Contig

Accession contig_10
Length 146103 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2790
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15584 nickel transport system substrate-binding protein ABC transporters -

Protein Sequence

MRNVVRSLLLSAALVAGSLNTAFADPHLNFAWPVNVGPLNPHQYAPNQMAGQTMVYEPLVRYMNDGTVKPWLAESWTVSDDGKTYIFTLREDVKFSNGEKFDAAAAKANFDAILANRERHAWLELANQITAVEDIAPNQLKITLKDAYYPILQELALPRPFRFIAPSQFKDGGTKDGIIKPIGTGPWILTESRLSEKDEFIRNESYWGKKPVYESVTFKVIPDPNTRAVAFEAGEVDLLYGTDGIIYPDTYQRFKNMPGYTTKLSAPLESLVLAINTKTGPTRDLAVRRAINHAVDKDKMIEKVLYGTQLKADTLFSENVPYADAGLTPYAYNVEEAKSLLENAGWKAKTENGIREKDGEPLVVELNFVGTDAVAKSISEVVQADLRRAGIDVKLVGEEESSIYSRQKDGRFGMIFNGTWGAPFDPHAFVSSMRIPSHADYQAQQGLADKAEIDAKITQVLTTTDEKQRRALYHDILTRLHEEAVYLPLTYITAIAVAKPEIGDVPFSAMSNEIPFDQLTPTAK

Flanking regions ( +/- flanking 50bp)

CGGTTTCTGACTTCTTTATTTATTTGTCTGTGGCACATCAGGAGTGAAATATGCGTAACGTTGTCCGTTCTTTATTATTGTCTGCGGCGCTCGTGGCCGGGTCGTTAAATACCGCCTTTGCCGATCCGCATTTAAATTTTGCCTGGCCGGTGAATGTGGGGCCGCTGAATCCGCATCAGTACGCGCCGAATCAGATGGCCGGACAAACCATGGTGTATGAGCCGCTGGTCCGTTATATGAATGACGGAACCGTAAAGCCCTGGCTGGCGGAATCATGGACAGTTTCGGATGACGGTAAAACCTATATTTTCACATTACGTGAAGATGTGAAGTTCTCCAACGGCGAAAAATTTGATGCCGCTGCGGCCAAAGCAAACTTTGATGCCATTCTGGCAAACCGCGAGCGTCACGCCTGGCTTGAACTGGCTAATCAGATTACGGCGGTTGAGGATATCGCGCCGAATCAGTTAAAAATCACCCTGAAAGATGCTTATTATCCTATTCTGCAGGAGCTGGCGCTGCCGCGTCCGTTCCGCTTTATTGCACCGTCGCAGTTTAAAGACGGCGGCACCAAAGACGGTATTATTAAACCGATCGGCACCGGCCCGTGGATATTAACGGAATCCCGTCTGAGTGAGAAAGATGAATTTATCCGCAACGAATCGTACTGGGGTAAAAAACCGGTTTATGAATCCGTTACGTTTAAAGTAATTCCTGACCCGAATACCCGTGCCGTGGCATTTGAAGCCGGTGAGGTGGATTTATTATATGGCACGGACGGCATTATTTATCCGGACACCTATCAGCGCTTTAAAAATATGCCGGGCTATACCACCAAACTCTCTGCACCTCTGGAATCACTGGTGCTGGCTATCAATACCAAAACCGGGCCGACCCGTGATTTAGCTGTGCGTAGAGCCATTAATCACGCGGTTGATAAAGATAAAATGATTGAAAAGGTGCTGTATGGTACACAATTAAAAGCGGACACCCTTTTCTCAGAAAATGTGCCGTATGCAGACGCCGGTTTAACACCGTATGCCTATAACGTTGAAGAAGCGAAATCCCTGCTGGAAAACGCCGGCTGGAAAGCGAAAACCGAAAACGGTATCCGTGAGAAAGATGGCGAGCCGCTGGTGGTGGAGCTGAATTTTGTCGGTACCGATGCGGTGGCGAAGTCGATTTCTGAAGTGGTTCAGGCCGATCTGCGCCGTGCCGGGATTGATGTGAAGCTGGTCGGAGAGGAGGAAAGCAGTATCTACTCACGTCAGAAAGACGGCCGCTTCGGGATGATTTTCAACGGCACCTGGGGTGCGCCGTTTGACCCGCACGCGTTTGTCAGTTCCATGCGTATTCCGTCCCATGCCGATTATCAGGCACAACAAGGGCTGGCGGATAAAGCGGAAATCGATGCCAAAATCACACAGGTGCTGACCACCACAGATGAAAAACAGCGTCGTGCGTTGTATCACGATATCCTGACCCGTCTGCATGAAGAAGCGGTTTATCTGCCGCTGACCTACATCACTGCCATTGCGGTGGCAAAACCGGAAATCGGCGATGTGCCGTTCAGCGCGATGTCGAATGAGATCCCGTTTGATCAGCTGACGCCAACTGCGAAGTAACAGGTCCGCGATTATGATGCGATTTATTTTCCGGCGGGTGCTGCTGCTGA