Orthogroup:group_2790


Homologs in group_2790

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08940 FBDBKF_08940 Morganella morganii S1 nikA nickel ABC transporter substrate-binding protein
EHELCC_10470 EHELCC_10470 Morganella morganii S2 nikA nickel ABC transporter substrate-binding protein
NLDBIP_10815 NLDBIP_10815 Morganella morganii S4 nikA nickel ABC transporter substrate-binding protein
LHKJJB_10540 LHKJJB_10540 Morganella morganii S3 nikA nickel ABC transporter substrate-binding protein
HKOGLL_13600 HKOGLL_13600 Morganella morganii S5 nikA nickel ABC transporter substrate-binding protein
PMI_RS14570 PMI_RS14570 Proteus mirabilis HI4320 nikA nickel ABC transporter substrate-binding protein

Distribution of group_2790 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2790 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2790

Orthogroup content: 6 members

Help

This page summarizes the annotation of all members of the orthologous group group_2790.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nikA 6

Product

# Product Occurence
1 nickel ABC transporter substrate-binding protein 6

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0747 6 E Amino acid transport and metabolism (E) ABC-type transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15584 6 nickel transport system substrate-binding protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00496 6 Bacterial extracellular solute-binding proteins, family 5 Middle

Annotations of the 73 SwissProt hits

Annotation Number of occurrences
Di/tripeptide-binding protein 1 1
Di/tripeptide-binding protein 2 1
Di/tripeptide-binding protein 3 1
Di/tripeptide-binding protein 4 1
Dipeptide-binding protein 3
Dipeptide-binding protein DppE 1
Glutathione-binding protein GsiB 16
Heme-binding protein A 1
Metal-staphylopine-binding protein CntA 2
Nickel-binding periplasmic protein 1
Nickel-binding protein NikA 1
Oligopeptide-binding protein AliA 1
Oligopeptide-binding protein AliB 2
Oligopeptide-binding protein AppA 1
Oligopeptide-binding protein OppA 4
Oligopeptide-binding protein SarA 1
Peptide transport periplasmic protein SapA 2
Peptidoglycan-binding protein YepA 1
Periplasmic murein peptide-binding protein MppA 1
Periplasmic oligopeptide-binding protein OppA 3
Probable ABC transporter periplasmic-binding protein SapA 1
Probable ABC transporter-binding protein DR_1571 1
Probable D,D-dipeptide-binding periplasmic protein DdpA 1
Probable deoxycholate-binding periplasmic protein YgiS 1
Probable di/tripeptide-binding protein 5 1
Probable peptide ABC transporter periplasmic-binding protein y4tO 1
Probable peptide-binding protein YejA 1
Protein XP55 1
Putative ABC transporter peptide-binding protein BAB2_0812 1
Putative ABC transporter peptide-binding protein BMEII0859 1
Putative ABC transporter peptide-binding protein BOV_A0352 1
Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 1
Putative ABC transporter peptide-binding protein BruAb2_0792 1
Putative binding protein BAB2_0664 1
Putative binding protein BMEII0691 1
Putative binding protein BRA0576/BS1330_II0571 1
Putative binding protein BruAb2_0648 1
Putative binding protein HI_0213 1
Putative peptide-binding periplasmic protein BAB2_1049 1
Putative peptide-binding periplasmic protein BMEII0210 1
Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 1
Putative peptide-binding periplasmic protein BruAb2_1030 1
Tripeptide-binding protein 1
Uncharacterized protein MT1317 1
Uncharacterized protein Mb1311c 1
Uncharacterized protein Rv1280c 1
Uncharacterized protein YejA 1
Uncharacterized protein y4wM 1

Protein length

Min length 524
Max length 525
Mean length (sd) 524.2 (0.4)
Median length 524.0

Protein length distribution