Homologs in group_441

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_01110 EHELCC_01110 100.0 Morganella morganii S2 ynbB putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
NLDBIP_02350 NLDBIP_02350 100.0 Morganella morganii S4 ynbB putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
LHKJJB_03865 LHKJJB_03865 100.0 Morganella morganii S3 ynbB putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
HKOGLL_03180 HKOGLL_03180 100.0 Morganella morganii S5 ynbB putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
F4V73_RS06410 F4V73_RS06410 94.8 Morganella psychrotolerans - phosphatidate cytidylyltransferase
PMI_RS10815 PMI_RS10815 79.2 Proteus mirabilis HI4320 - phosphatidate cytidylyltransferase

Distribution of the homologs in the orthogroup group_441

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_441

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76091 6.73e-55 183 39 6 300 3 ynbB Uncharacterized protein YnbB Escherichia coli (strain K12)
P0ABG3 3.6e-26 107 46 1 121 3 cdsA Phosphatidate cytidylyltransferase Shigella flexneri
P0ABG1 3.6e-26 107 46 1 121 1 cdsA Phosphatidate cytidylyltransferase Escherichia coli (strain K12)
P0ABG2 3.6e-26 107 46 1 121 3 cdsA Phosphatidate cytidylyltransferase Escherichia coli O157:H7
O67292 2.06e-24 102 39 1 152 3 cdsA Phosphatidate cytidylyltransferase Aquifex aeolicus (strain VF5)
Q4L5W3 2.84e-23 99 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus haemolyticus (strain JCSC1435)
Q7A121 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain MW2)
Q6G9V2 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain MSSA476)
Q6GHH4 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain MRSA252)
Q7A5Y4 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain N315)
Q99UL1 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGH0 5.64e-23 98 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus aureus (strain COL)
Q9CBU1 1.19e-22 99 43 3 143 3 cdsA Phosphatidate cytidylyltransferase Mycobacterium leprae (strain TN)
Q8CST9 2.62e-22 97 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPT0 2.62e-22 97 34 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q49X46 5.24e-20 90 35 2 158 3 cdsA Phosphatidate cytidylyltransferase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P63759 9.87e-19 87 42 1 114 3 cdsA Phosphatidate cytidylyltransferase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WPF7 1.87e-18 87 39 2 133 1 cdsA Phosphatidate cytidylyltransferase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPF6 1.87e-18 87 39 2 133 3 cdsA Phosphatidate cytidylyltransferase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O31752 9.64e-18 84 40 3 129 3 cdsA Phosphatidate cytidylyltransferase Bacillus subtilis (strain 168)
O25004 2.07e-17 83 42 3 127 3 cdsA Phosphatidate cytidylyltransferase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZML7 3.5e-17 82 42 3 127 3 cdsA Phosphatidate cytidylyltransferase Helicobacter pylori (strain J99 / ATCC 700824)
P44937 8.41e-17 82 37 3 137 3 cdsA Phosphatidate cytidylyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q59640 3.15e-16 80 35 2 131 3 cdsA Phosphatidate cytidylyltransferase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P73548 4.77e-16 80 39 2 113 3 cdsA Phosphatidate cytidylyltransferase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9X1B7 8.55e-15 76 29 7 244 1 cdsA Phosphatidate cytidylyltransferase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9PJU1 3.23e-14 75 37 2 129 3 cdsA Phosphatidate cytidylyltransferase Chlamydia muridarum (strain MoPn / Nigg)
Q1RII7 1.52e-13 72 34 2 135 3 cdsA Phosphatidate cytidylyltransferase Rickettsia bellii (strain RML369-C)
Q1PE48 2.24e-13 73 28 5 205 1 CDS3 Phosphatidate cytidylyltransferase 3 Arabidopsis thaliana
Q4ULR7 4.73e-13 70 34 1 119 3 cdsA Phosphatidate cytidylyltransferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O84457 5.17e-13 71 37 2 129 3 cdsA Phosphatidate cytidylyltransferase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9ZDA8 1.16e-12 69 35 1 117 3 cdsA Phosphatidate cytidylyltransferase Rickettsia prowazekii (strain Madrid E)
Q68WV5 1.66e-12 68 34 2 123 3 cdsA Phosphatidate cytidylyltransferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9M001 6.2e-12 69 34 4 119 1 CDS5 Phosphatidate cytidylyltransferase 5, chloroplastic Arabidopsis thaliana
Q94A03 6.33e-12 68 34 2 116 1 CDS4 Phosphatidate cytidylyltransferase 4, chloroplastic Arabidopsis thaliana
Q95ZE3 2.5e-11 67 27 9 230 3 CDS1 Phosphatidate cytidylyltransferase Encephalitozoon cuniculi (strain GB-M1)
P56079 4.35e-11 66 26 12 337 1 Cds Phosphatidate cytidylyltransferase, photoreceptor-specific Drosophila melanogaster
Q92I31 5.12e-11 65 33 1 117 3 cdsA Phosphatidate cytidylyltransferase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9P381 5.59e-11 66 29 6 206 1 SPBC13A2.03 Putative phosphatidate cytidylyltransferase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9Z7Y6 1.46e-10 64 36 3 123 3 cdsA Phosphatidate cytidylyltransferase Chlamydia pneumoniae
O04928 3.69e-10 63 27 7 205 1 CDS1 Phosphatidate cytidylyltransferase 1 Arabidopsis thaliana
O49639 3.91e-10 63 26 7 207 1 CDS2 Phosphatidate cytidylyltransferase 2 Arabidopsis thaliana
Q91XU8 7.63e-10 63 25 12 336 1 Cds2 Phosphatidate cytidylyltransferase 2 Rattus norvegicus
P53439 1.51e-09 62 33 4 151 3 cdgs-1 Phosphatidate cytidylyltransferase Caenorhabditis elegans
Q99L43 1.9e-09 61 24 12 336 1 Cds2 Phosphatidate cytidylyltransferase 2 Mus musculus
O95674 2.11e-09 61 23 10 336 1 CDS2 Phosphatidate cytidylyltransferase 2 Homo sapiens
A0JNC1 2.37e-09 61 24 11 335 2 CDS2 Phosphatidate cytidylyltransferase 2 Bos taurus
O35052 2.52e-09 61 25 13 346 1 Cds1 Phosphatidate cytidylyltransferase 1 Rattus norvegicus
Q8YHH2 3.26e-09 60 34 2 119 3 cdsA Phosphatidate cytidylyltransferase Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P98191 3.94e-09 60 25 13 346 1 Cds1 Phosphatidate cytidylyltransferase 1 Mus musculus
Q92903 4.94e-09 60 25 12 346 1 CDS1 Phosphatidate cytidylyltransferase 1 Homo sapiens
O04940 3.66e-08 57 26 7 235 1 CDS1 Phosphatidate cytidylyltransferase 1 Solanum tuberosum
Q8G0E0 5.37e-08 56 34 2 119 3 cdsA Phosphatidate cytidylyltransferase Brucella suis biovar 1 (strain 1330)
P0C102 5.53e-08 56 34 2 119 3 cdsA Phosphatidate cytidylyltransferase Brucella abortus biovar 1 (strain 9-941)
Q2YRP9 5.53e-08 56 34 2 119 3 cdsA Phosphatidate cytidylyltransferase Brucella abortus (strain 2308)
P75160 5.77e-06 50 28 5 157 3 cdsA Putative phosphatidate cytidylyltransferase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q49433 5.23e-05 48 29 6 157 3 cdsA Putative phosphatidate cytidylyltransferase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_00435
Feature type CDS
Gene ynbB
Product putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
Location 66011 - 66937 (strand: 1)
Length 927 (nucleotides) / 308 (amino acids)

Contig

Accession contig_1
Length 309072 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_441
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01148 Cytidylyltransferase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4589 General function prediction only (R) R Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase

Kegg Ortholog Annotation(s)

Protein Sequence

MKDNELFWIFSGLFGFLAVATVIGLILKQVKGNTSVISNLNARIRAWWLMCIIAAVAISIGPIGSVVLFAFMSLLALRELITLTPTHRADHGALFWCFFIILPVQYVLVGVQWYNLLAVFIPVYAFLFIPTRMVLSGDTRHFLERMAKIQWSVMIAVYCLSYAPALLVLPIPDFTDNINLLLFLMIVVQISDVLQYVFGKLFGKRPIVPKLSPNKTVEGFIGGILSASCVGMALWWATPFSPWAAFLLSLLICLAGFAGGLCMSAIKRDSGIKDFGAMIEGHGGMMDRLDSLCFAAPVFFHVLKYFYT

Flanking regions ( +/- flanking 50bp)

CAAAGCGGACTTTTTAGTGCGGACCCGCCGGGCGTTAGAGGCAATACATCATGAAAGATAATGAATTATTCTGGATCTTCAGCGGACTGTTCGGGTTCCTGGCGGTGGCAACGGTTATCGGCCTGATCCTGAAGCAGGTTAAGGGAAATACCTCGGTTATCAGTAACCTGAATGCCCGTATCCGCGCCTGGTGGCTGATGTGTATTATCGCCGCCGTGGCTATCAGCATCGGGCCTATCGGCTCTGTGGTGCTGTTTGCCTTTATGTCCCTGCTGGCACTGCGTGAGCTTATCACCCTGACGCCGACACACCGCGCCGACCACGGTGCCCTGTTCTGGTGCTTCTTTATCATTCTGCCGGTACAGTATGTGCTGGTCGGTGTTCAGTGGTATAACCTGCTGGCGGTCTTTATCCCCGTCTATGCGTTCCTGTTTATCCCGACCCGCATGGTGCTCTCCGGTGACACCCGCCACTTCCTGGAGCGCATGGCAAAAATCCAGTGGAGTGTGATGATTGCGGTTTACTGCCTCAGTTATGCCCCTGCACTACTGGTACTGCCGATTCCGGATTTCACGGATAATATCAACCTGCTGCTGTTTCTGATGATCGTGGTTCAGATTTCTGACGTGCTGCAATATGTATTCGGTAAACTATTCGGCAAACGCCCGATTGTGCCGAAACTCAGCCCGAACAAAACCGTTGAAGGCTTTATCGGCGGGATCCTCAGTGCGAGCTGTGTCGGTATGGCACTGTGGTGGGCCACACCATTCAGCCCGTGGGCGGCATTCCTGCTCTCACTGTTGATTTGCCTGGCCGGTTTCGCGGGCGGGTTGTGTATGTCCGCCATCAAGCGGGACAGCGGGATCAAAGATTTCGGTGCCATGATTGAGGGTCACGGCGGCATGATGGACAGACTGGATTCCCTCTGTTTCGCAGCCCCGGTTTTCTTCCATGTGCTGAAATATTTTTATACCTGATGATTCAGGAAATTCTGCTGATCCGCCACGGTGAACCGGTGCCGGACAGA