Homologs in group_2055

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15405 FBDBKF_15405 95.4 Morganella morganii S1 rbsC ribose ABC transporter permease
EHELCC_15765 EHELCC_15765 95.4 Morganella morganii S2 rbsC ribose ABC transporter permease
NLDBIP_16605 NLDBIP_16605 95.4 Morganella morganii S4 rbsC ribose ABC transporter permease
LHKJJB_16200 LHKJJB_16200 95.4 Morganella morganii S3 rbsC ribose ABC transporter permease
HKOGLL_15970 HKOGLL_15970 95.4 Morganella morganii S5 rbsC ribose ABC transporter permease
PMI_RS00435 PMI_RS00435 90.0 Proteus mirabilis HI4320 rbsC ribose ABC transporter permease

Distribution of the homologs in the orthogroup group_2055

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2055

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGI1 6.23e-173 485 80 0 320 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 6.23e-173 485 80 0 320 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 6.23e-173 485 80 0 320 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P44736 2.02e-136 392 67 0 304 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36948 1.15e-102 306 49 3 323 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P77315 3.58e-57 191 37 3 324 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
P32720 5.15e-56 187 39 7 328 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P0AE27 6.05e-56 187 38 4 318 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 6.05e-56 187 38 4 318 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
P44885 6.11e-48 167 34 6 302 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1JUP6 2.7e-45 160 34 4 324 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P0AGI7 5.43e-45 160 35 6 353 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 5.43e-45 160 35 6 353 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 5.43e-45 160 35 6 353 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 5.43e-45 160 35 6 353 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P45045 1.47e-40 148 36 7 344 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37772 2.01e-40 147 35 6 313 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q9F9B1 1.23e-37 140 34 4 286 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P55569 2.11e-37 139 32 5 328 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q2PBL9 7.03e-37 137 32 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q8G846 7.18e-37 138 33 3 323 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
Q2PBM2 3.38e-36 136 33 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
Q56036 5.47e-36 135 36 4 321 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57321 7.14e-36 139 33 7 321 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
Q7N2D8 1.09e-35 134 32 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q8G845 1.27e-35 134 32 5 322 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
B1JLQ1 2.03e-34 131 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 4.81e-34 130 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 4.81e-34 130 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
P23200 8.05e-34 129 35 4 321 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
A7FMJ8 8.42e-34 130 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL6 3.52e-33 128 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 3.52e-33 128 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 3.52e-33 128 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 3.52e-33 128 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 3.52e-33 128 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
P39328 5.52e-33 127 38 2 254 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
A1JJ54 1.51e-29 119 31 2 285 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8ZKQ2 7.83e-26 108 28 5 300 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 7.83e-26 108 28 5 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 7.83e-26 108 28 5 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q5PJE5 1.08e-25 107 29 5 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X7 2.7e-25 106 28 5 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
A1JJ53 1.29e-24 105 30 3 266 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q4J711 2.3e-23 102 30 8 287 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
A7FMJ9 2.91e-23 101 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1IRU6 3.05e-23 101 32 2 280 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 3.05e-23 101 32 2 280 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
B2K3F9 4.61e-23 100 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ2 4.9e-23 100 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 4.9e-23 100 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
Q2PBM1 7.25e-23 100 27 2 302 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
B1LFA1 1e-22 100 31 1 280 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
A4TQL7 1.01e-22 99 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 1.01e-22 99 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 1.01e-22 99 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 1.01e-22 99 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 1.01e-22 99 26 4 309 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
P77672 1.64e-22 99 31 1 280 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.64e-22 99 31 1 280 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8XAY8 1.76e-22 99 31 2 280 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q0T4L8 4.31e-22 98 32 2 280 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
Q83RD8 9.86e-22 97 31 1 280 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
Q8Z2X6 1.32e-21 97 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 2.07e-21 96 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
Q8ZKQ3 2.37e-21 96 29 3 305 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 2.37e-21 96 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A9MZG2 2.67e-21 95 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
A4WER3 9.56e-20 91 30 4 280 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
A4WER2 1.5e-19 90 27 2 270 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
A6TEB7 1.71e-19 90 32 6 290 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P0AFS2 1.02e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.02e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.02e-18 88 28 4 295 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.02e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.02e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.02e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
B1LFA0 1.39e-18 88 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
Q8X504 1.83e-18 87 28 4 295 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
Q7N2D7 1.25e-17 85 25 4 310 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A6TEB6 2.42e-17 84 27 2 285 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q2PBL8 5.75e-17 83 27 3 265 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17740
Feature type CDS
Gene rbsC
Product ribose ABC transporter permease
Location 189966 - 190937 (strand: 1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2055
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10440 ribose transport system permease protein ABC transporters -

Protein Sequence

MRTESTPASKRWFTKEWLLEQKSLIALFILIFVVSMISPTFFTLNNMFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASMVGADVNAIVAVFGALALGAAIGGVTGIIVAKGKVQAFIATLVMMLLLRGVTRVYTDGSPVSTGFSDNADVFSWLGIGRLFGIPAPVWLMIVVFAGAWYLLNHTRLGRHIYALGGNESATRLSGISVDKIKIIVYALCGLLAALASVIEVARLSSAQPMAGNGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNALNLLGISSNYQMIVKAVVILLAVLVDNKSSK

Flanking regions ( +/- flanking 50bp)

TAATGGCCGCGGCAGTCGGCAAACAATATGGCGCAGGGCAGGAGTAAGATATGCGTACAGAGTCAACCCCGGCGTCTAAGCGCTGGTTTACCAAAGAATGGCTGCTTGAGCAGAAATCACTGATCGCATTATTTATCCTGATTTTTGTCGTCTCAATGATCAGCCCGACCTTTTTTACGCTCAATAATATGTTCAATATTCTTCAGCAGACATCTGTTAACGCCATCATGGCAGTGGGGATGACGCTGGTTATCCTGACGTCCGGGATTGACCTGTCTGTCGGCTCTCTTCTGGCACTGACGGGCGCAGTTGCTGCGTCCATGGTCGGCGCGGATGTGAATGCGATTGTGGCGGTATTTGGCGCACTGGCGCTGGGTGCGGCAATCGGTGGTGTAACCGGGATAATAGTCGCTAAGGGAAAAGTACAGGCGTTTATTGCCACTCTGGTGATGATGTTGTTACTTCGCGGTGTAACCCGTGTGTATACCGACGGCAGCCCGGTCAGTACCGGTTTCAGTGATAATGCCGATGTATTCAGCTGGCTGGGTATCGGTCGTCTGTTCGGCATCCCCGCACCGGTCTGGCTGATGATTGTCGTTTTCGCCGGTGCCTGGTATCTGCTGAACCATACCCGCCTCGGACGTCATATCTATGCGCTGGGCGGTAATGAATCCGCCACCCGGTTGTCCGGTATCAGTGTTGATAAGATCAAAATTATTGTTTACGCATTGTGTGGTTTGCTGGCGGCATTAGCCAGTGTGATTGAAGTGGCGCGTTTATCCTCTGCACAGCCAATGGCCGGGAATGGTTATGAGCTGGATGCGATTGCGGCAGTGGTTCTGGGTGGCACCAGTCTTGCCGGCGGGAAAGGACGCATCATGGGCACCCTTATCGGGGCGCTGATTTTAGGTTTTCTGAATAACGCGCTGAATCTGCTGGGGATTTCATCCAATTACCAGATGATTGTCAAAGCCGTTGTGATTTTGCTGGCTGTACTCGTTGATAATAAAAGCAGTAAATAATCTATTTACCCGACCCTACAGGAACTGACACATGAAACTGAAAAAGATTG