Homologs in group_2164

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16280 FBDBKF_16280 92.0 Morganella morganii S1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
EHELCC_16315 EHELCC_16315 92.0 Morganella morganii S2 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
NLDBIP_17025 NLDBIP_17025 92.0 Morganella morganii S4 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
LHKJJB_16945 LHKJJB_16945 92.0 Morganella morganii S3 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
HKOGLL_16895 HKOGLL_16895 92.0 Morganella morganii S5 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
PMI_RS15660 PMI_RS15660 78.6 Proteus mirabilis HI4320 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase

Distribution of the homologs in the orthogroup group_2164

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2164

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC75 0.0 634 71 0 425 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli (strain K12)
P0AC76 0.0 634 71 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC77 0.0 634 71 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O157:H7
P44806 2.39e-149 433 52 2 418 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8VZA5 2.74e-60 205 34 6 395 2 KDTA Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial Arabidopsis thaliana
Q45374 8.1e-59 201 34 11 431 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Bordetella pertussis
Q8R6G8 3.04e-49 180 30 6 355 3 trmB Bifunctional glycosyltransferase/methyltransferase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q1RGU8 4.98e-47 169 28 6 392 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia bellii (strain RML369-C)
Q4UND5 1.72e-46 169 29 7 372 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92JE9 2.33e-42 158 27 6 376 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q68XV7 3.19e-42 157 28 6 371 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
F0T4D1 1.5e-40 152 28 9 409 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydophila psittaci (strain ATCC VR-125 / 6BC)
Q9ZE58 3.6e-39 149 27 8 379 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia prowazekii (strain Madrid E)
O66663 8.83e-37 140 30 11 344 1 kdtA 3-deoxy-D-manno-octulosonic acid transferase Aquifex aeolicus (strain VF5)
Q3KMF4 2.31e-35 138 24 11 432 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13)
P0CE14 2.58e-35 138 24 11 432 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
B0B9V8 1.49e-34 136 24 11 432 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
Q9PKI5 1.76e-30 125 25 10 382 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia muridarum (strain MoPn / Nigg)
Q46222 6.42e-29 120 25 11 417 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17310
Feature type CDS
Gene waaA
Product lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
Location 95054 - 96331 (strand: 1)
Length 1278 (nucleotides) / 425 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2164
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00534 Glycosyl transferases group 1
PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1519 Cell wall/membrane/envelope biogenesis (M) M 3-deoxy-D-manno-octulosonic-acid transferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] Lipopolysaccharide biosynthesis
Metabolic pathways		 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type

Protein Sequence

MLLRVYQVLLYLIQPLIWLRLLWRSRRSPAYRKRWAERYGFCKGKTGVGGIVLHSVSVGETLAAVPLVRALRHHYPTLPITVTTMTPTGSERVLSALSDDVFHVYLPYDLPGSMKRFLNTVQPCLVIVMETELWPNMITQLHRRKIPLVIANARLSARSAAGYQKVANFVKTILNRITLVAAQNQEDGDRFIALGLRRQQLHVTGSLKFDISVTPELAAKAVALRRQWAARRPVWIATSTHEGEEDIILNTHKTLLARYPNLLLILVPRHPERFAKARELTEKAGLTYVMRSNNTIPTPETQVVVGDSMGELMLLYGLADIAFVGGSLVERGGHNPLEAAAHALPVLMGPHTFNFNNICSKLQQADALITVTDEKSLSDAVSNLLDDEDYRLYCGRHAAEVLHENQGALHRLLQLLSPYLPQRGH

Flanking regions ( +/- flanking 50bp)

TGTTAGTTTTATGCTATTATTACCGCAATCTTATCTGCGAAACTGATAAAATGTTACTGCGCGTATACCAGGTATTACTTTACCTCATTCAACCTCTTATCTGGTTACGCCTGTTGTGGCGCAGCCGCCGTTCTCCTGCCTACCGCAAGCGCTGGGCTGAACGTTATGGTTTCTGTAAAGGGAAAACCGGTGTCGGCGGCATTGTTCTGCACTCGGTTTCTGTGGGTGAAACCCTCGCGGCCGTTCCTCTTGTCCGTGCATTGCGCCACCACTATCCTACCTTGCCCATCACCGTTACCACCATGACACCAACCGGCTCAGAGCGTGTGTTATCCGCACTGAGTGATGATGTTTTTCACGTCTATCTGCCTTATGACTTACCCGGCTCCATGAAACGGTTTCTTAATACTGTTCAGCCGTGTCTGGTGATTGTCATGGAAACCGAGCTGTGGCCGAATATGATAACGCAGCTGCACCGGCGTAAAATCCCGCTGGTTATTGCGAATGCCCGTCTCTCAGCGCGATCAGCCGCCGGGTATCAGAAAGTCGCCAATTTTGTCAAAACCATTTTAAACCGGATAACCCTGGTCGCCGCCCAAAATCAGGAAGATGGCGATCGCTTTATTGCACTGGGACTGCGCCGTCAGCAGTTACACGTTACCGGCAGCCTGAAATTTGATATCTCCGTCACACCTGAACTGGCCGCAAAAGCGGTGGCATTGCGCCGTCAGTGGGCTGCCCGCCGTCCGGTCTGGATAGCAACCAGCACCCACGAAGGCGAAGAAGATATTATTCTGAACACCCACAAAACACTGCTCGCCCGCTACCCTAATCTGTTACTCATCCTTGTTCCCCGCCATCCTGAACGGTTTGCAAAAGCCCGGGAACTGACAGAAAAAGCCGGGTTAACCTATGTCATGCGCAGTAATAACACCATCCCGACACCGGAAACACAGGTGGTCGTCGGCGACAGCATGGGTGAACTGATGCTTCTGTACGGACTGGCAGATATTGCGTTTGTCGGCGGCAGCCTGGTTGAGCGCGGCGGACATAATCCGCTGGAAGCCGCAGCACATGCACTCCCTGTATTGATGGGACCGCATACCTTTAATTTTAATAATATTTGCAGCAAGCTACAGCAGGCCGATGCACTGATCACCGTCACGGATGAAAAAAGTCTCAGTGACGCCGTCAGTAATCTGCTGGATGATGAAGATTATCGCCTGTACTGCGGTCGCCATGCGGCTGAAGTTCTCCATGAAAATCAGGGCGCACTTCACCGTCTGCTGCAACTACTCAGCCCGTATCTGCCACAACGGGGGCACTGATGCCGGAGATAAAACGCCTTTCTGTCGTGATGATCAGTAAGAACAATGCT