Homologs in group_2164

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16280 FBDBKF_16280 100.0 Morganella morganii S1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
EHELCC_16315 EHELCC_16315 100.0 Morganella morganii S2 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
LHKJJB_16945 LHKJJB_16945 100.0 Morganella morganii S3 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
HKOGLL_16895 HKOGLL_16895 100.0 Morganella morganii S5 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
F4V73_RS17310 F4V73_RS17310 92.0 Morganella psychrotolerans waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
PMI_RS15660 PMI_RS15660 79.3 Proteus mirabilis HI4320 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase

Distribution of the homologs in the orthogroup group_2164

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2164

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC75 0.0 653 73 0 425 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli (strain K12)
P0AC76 0.0 653 73 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC77 0.0 653 73 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O157:H7
P44806 3.54e-149 433 52 2 418 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45374 2.84e-62 210 35 13 437 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Bordetella pertussis
Q8VZA5 4.3e-59 202 34 6 395 2 KDTA Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial Arabidopsis thaliana
Q8R6G8 2.6e-50 183 32 5 344 3 trmB Bifunctional glycosyltransferase/methyltransferase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q1RGU8 1.58e-48 173 29 6 392 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia bellii (strain RML369-C)
Q4UND5 3.24e-48 174 30 7 373 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92JE9 4.22e-44 162 28 6 376 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q68XV7 1.46e-42 159 28 6 371 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
F0T4D1 1.55e-41 155 28 9 409 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydophila psittaci (strain ATCC VR-125 / 6BC)
Q3KMF4 1.64e-38 147 26 11 429 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13)
P0CE14 2.27e-38 146 26 11 429 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
O66663 4.71e-38 144 31 12 345 1 kdtA 3-deoxy-D-manno-octulosonic acid transferase Aquifex aeolicus (strain VF5)
Q9ZE58 4.82e-38 146 27 8 379 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia prowazekii (strain Madrid E)
B0B9V8 1.46e-37 144 26 11 429 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
Q9PKI5 5.37e-32 129 25 9 379 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia muridarum (strain MoPn / Nigg)
Q46222 7.42e-30 123 26 11 431 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_17025
Feature type CDS
Gene waaA
Product lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
Location 17934 - 19211 (strand: 1)
Length 1278 (nucleotides) / 425 (amino acids)

Contig

Accession ZDB_535
Length 62169 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2164
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00534 Glycosyl transferases group 1
PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1519 Cell wall/membrane/envelope biogenesis (M) M 3-deoxy-D-manno-octulosonic-acid transferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] Lipopolysaccharide biosynthesis
Metabolic pathways		 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type

Protein Sequence

MLLRVYQVLLYLIQPLIWLRLLWRSRRSPAYRRRWGERYGFCKGKTGTGGIILHSVSVGETLAAVPLVRALRHHYPTLPITVTTMTPTGSERVLSALGDDVYHVYLPYDLPGSMKRFFNTVQPKLVIVMETELWPNMITELHRRKIPLVIANARLSARSAAGYKKAGSFVKTILNRITLVAAQNQEDGERFIELGLRRQQLHVTGSLKFDISVTPELAAKAVTLRRQWAARRPVWIATSTHEGEEEIILNAHKALLNHFPNLLLILVPRHPERFAKARELTEKAGLTYVMRSSNTIPSPETQVVVGDTMGELMLLYGLADIAFVGGSLVERGGHNPLEAAAHALPVLMGPHTFNFKNICGKLQQADALLTVTDEQSLSDAVSNLLNDEDYRLYCGRHAAEVLHENQGALHRLMQLLGPYLPPRSH

Flanking regions ( +/- flanking 50bp)

TGTTAGTTTTATGCTACTATTGCCGCAATCTTATCTGCGAAACTGATAAAATGTTACTGCGTGTATACCAGGTTCTGCTTTACCTGATCCAACCTCTTATCTGGTTACGTCTGTTATGGCGCAGCCGCCGCTCCCCGGCCTACCGCAGACGCTGGGGCGAACGTTATGGTTTCTGTAAAGGAAAAACCGGCACCGGCGGTATCATCCTGCACTCGGTTTCTGTCGGCGAAACACTCGCCGCAGTGCCGCTGGTCCGAGCATTGCGCCACCATTATCCGACGTTACCTATCACTGTCACCACTATGACACCGACCGGCTCAGAGCGGGTTTTATCAGCATTAGGTGATGATGTTTATCACGTCTATCTGCCTTACGACTTGCCGGGGTCAATGAAACGGTTTTTCAATACTGTTCAGCCGAAACTGGTGATCGTGATGGAAACCGAACTGTGGCCAAACATGATAACCGAGCTGCACCGCCGGAAAATTCCGCTGGTGATCGCCAATGCCCGCCTGTCAGCGCGCTCGGCCGCCGGTTATAAGAAAGCAGGCAGTTTCGTAAAAACCATCCTGAACCGGATCACCCTGGTGGCCGCGCAGAATCAGGAAGACGGGGAACGCTTTATTGAGCTCGGCCTGCGCCGCCAGCAACTGCATGTGACCGGCAGCCTGAAGTTCGATATTTCTGTCACACCGGAACTGGCCGCCAAAGCCGTCACATTACGCCGTCAGTGGGCTGCCCGCCGTCCGGTCTGGATCGCAACCAGCACTCATGAAGGCGAAGAGGAAATTATCCTCAATGCTCATAAAGCTCTGCTGAACCACTTTCCGAACCTGCTGCTGATCCTGGTGCCGCGCCATCCGGAGCGGTTTGCCAAAGCACGGGAACTGACCGAAAAAGCCGGTCTGACCTATGTCATGCGCAGCAGCAACACCATTCCGTCACCGGAAACACAGGTGGTGGTCGGAGACACTATGGGTGAACTGATGCTGCTGTACGGACTGGCAGATATCGCGTTTGTCGGCGGCAGCCTGGTTGAACGCGGCGGACATAACCCGCTGGAAGCTGCCGCGCACGCCCTGCCGGTACTGATGGGACCGCACACCTTCAACTTCAAAAATATCTGCGGCAAATTACAGCAGGCCGATGCCCTGCTGACAGTCACCGATGAACAGAGTCTGAGTGACGCTGTCAGTAATCTGCTCAATGATGAGGATTACCGGCTGTACTGCGGACGGCACGCTGCTGAGGTACTTCATGAAAATCAGGGCGCACTGCACCGTCTGATGCAACTGCTCGGGCCGTATCTGCCACCGCGGAGCCACTGATGACAGATAAAAAACGTCTCTCCGTTGTGATGATCAGTAAAAACAATGCC