Homologs in group_2164

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16280 FBDBKF_16280 79.3 Morganella morganii S1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
EHELCC_16315 EHELCC_16315 79.3 Morganella morganii S2 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
NLDBIP_17025 NLDBIP_17025 79.3 Morganella morganii S4 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
LHKJJB_16945 LHKJJB_16945 79.3 Morganella morganii S3 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
HKOGLL_16895 HKOGLL_16895 79.3 Morganella morganii S5 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
F4V73_RS17310 F4V73_RS17310 78.6 Morganella psychrotolerans waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase

Distribution of the homologs in the orthogroup group_2164

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2164

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC75 0.0 674 75 0 425 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli (strain K12)
P0AC76 0.0 674 75 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC77 0.0 674 75 0 425 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Escherichia coli O157:H7
P44806 1.37e-153 444 52 2 419 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45374 1.14e-58 201 34 10 432 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Bordetella pertussis
Q8VZA5 2.61e-53 187 33 7 396 2 KDTA Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial Arabidopsis thaliana
Q8R6G8 2.39e-51 186 31 7 376 3 trmB Bifunctional glycosyltransferase/methyltransferase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q4UND5 4.12e-48 173 29 5 372 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q1RGU8 8.48e-45 164 26 7 409 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia bellii (strain RML369-C)
Q92JE9 4.49e-44 162 28 5 372 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q68XV7 4.41e-43 160 27 7 376 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
F0T4D1 4.13e-40 151 28 7 407 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydophila psittaci (strain ATCC VR-125 / 6BC)
O66663 9.06e-39 146 31 11 337 1 kdtA 3-deoxy-D-manno-octulosonic acid transferase Aquifex aeolicus (strain VF5)
Q9ZE58 2.66e-37 144 27 7 377 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Rickettsia prowazekii (strain Madrid E)
Q3KMF4 1.79e-34 136 24 12 434 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13)
P0CE14 1.9e-34 135 25 12 433 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PKI5 1.14e-33 134 26 10 373 3 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia muridarum (strain MoPn / Nigg)
B0B9V8 1.91e-33 133 24 12 433 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
Q46222 4.94e-28 118 24 8 430 1 waaA 3-deoxy-D-manno-octulosonic acid transferase Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15660
Feature type CDS
Gene waaA
Product lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
Location 3478833 - 3480110 (strand: -1)
Length 1278 (nucleotides) / 425 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2164
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00534 Glycosyl transferases group 1
PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1519 Cell wall/membrane/envelope biogenesis (M) M 3-deoxy-D-manno-octulosonic-acid transferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] Lipopolysaccharide biosynthesis
Metabolic pathways		 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type

Protein Sequence

MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCRDKVAPHGILLHSVSVGETLAAVPLVRALRHHYPDLPITVTTMTPTGSERVRSAFGDDVYHVYLPYDLPGSVNRFLTTVDPKLVIIMETELWPNLISQLYRRKIPLIIANARLSERSAVGYQKLGSFVKTMLRKITLIAAQNQEDGERFIALGLKRSHLHITGSLKFDISVTPELAAKAVALRRQWAAHRPVWIATSTHEGEEAIVLDTHKKLLAQFPQLLLILVPRHPERFAKAEQLTQEAGFKYTLRSSDAIPDAQTQVVIGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPYTFNFKNICAKLDQAEGLITVTDSDSMATAIASLLNDEDYRRYYGHHAVEVLHENQGALLRLLTLLSPYLPPRSH

Flanking regions ( +/- flanking 50bp)

TACACAGTGTGGTACTATAGGCTTTCGTCCAGATAAGTGAATTTGATAGCATGTTGTTGCGTTTATATCAGGTACTTCTTTACCTTATTCAACCTCTGATTTGGCTACGTCTTTTATTACGCAGCCGCAAAGCACCCGCCTATCGCAAACGGTGGGGTGAGCGCTATGGCTTTTGTCGAGACAAAGTCGCGCCTCATGGCATTTTATTGCACTCCGTTTCAGTGGGTGAAACACTTGCCGCTGTACCTCTTGTTCGTGCATTACGCCACCATTATCCCGATTTACCTATTACCGTCACCACCATGACACCAACAGGCTCAGAGCGCGTACGCTCTGCATTTGGTGACGATGTGTACCATGTCTACCTTCCTTATGATTTACCCGGCTCAGTTAATCGTTTTCTTACAACGGTTGATCCTAAATTGGTGATCATCATGGAAACAGAGCTGTGGCCAAATCTTATCTCACAGCTTTATCGTCGCAAAATCCCATTGATTATTGCTAATGCTCGCTTATCAGAGCGCTCAGCAGTGGGTTATCAAAAACTAGGTAGTTTTGTCAAAACGATGCTGAGAAAAATTACCTTAATTGCTGCCCAAAATCAGGAAGATGGCGAACGTTTTATTGCTTTAGGGCTAAAACGCTCACATCTGCATATTACCGGTAGCTTAAAGTTTGATATCTCGGTCACCCCTGAGCTCGCCGCTAAAGCAGTGGCATTACGCCGCCAGTGGGCAGCACATCGCCCTGTCTGGATAGCCACCAGTACCCATGAAGGGGAAGAGGCGATTGTCTTAGATACCCATAAAAAATTACTGGCACAATTTCCTCAACTGTTGCTGATTTTAGTTCCCCGCCATCCTGAGCGTTTTGCAAAAGCAGAGCAACTTACCCAAGAGGCCGGCTTTAAATATACCCTACGCAGTAGCGATGCTATTCCTGATGCACAAACCCAAGTGGTGATAGGCGATACTATGGGGGAGTTAATGTTGCTATATGGTATTGCTGATCTGGCCTTTGTTGGAGGCAGTTTAGTCGAGCGCGGTGGACATAACCCATTAGAAGCCGCAGCTCATGCTATTCCGGTCTTAATGGGGCCTTATACTTTTAATTTTAAAAATATCTGTGCCAAGTTAGACCAAGCTGAAGGGCTAATTACCGTCACTGATAGTGACTCTATGGCGACGGCAATCGCCTCATTACTCAATGATGAAGATTATCGCCGCTATTATGGACACCATGCCGTTGAGGTACTTCATGAGAATCAAGGGGCGTTATTGCGCTTATTAACCTTACTCTCTCCCTATCTGCCACCACGGAGTCACTAATGAGTGAAAGTAAACGCCTCTCGGTCGTGATGATCAGTAAAAACGTTGCG