Homologs in group_2116

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15900 FBDBKF_15900 77.1 Morganella morganii S1 comEA DNA uptake protein ComE or related DNA-binding protein
EHELCC_18500 EHELCC_18500 77.1 Morganella morganii S2 comEA DNA uptake protein ComE or related DNA-binding protein
NLDBIP_17335 NLDBIP_17335 77.1 Morganella morganii S4 comEA DNA uptake protein ComE or related DNA-binding protein
LHKJJB_17325 LHKJJB_17325 77.1 Morganella morganii S3 comEA DNA uptake protein ComE or related DNA-binding protein
HKOGLL_17070 HKOGLL_17070 77.1 Morganella morganii S5 comEA DNA uptake protein ComE or related DNA-binding protein
PMI_RS00580 PMI_RS00580 32.7 Proteus mirabilis HI4320 - ComEA family DNA-binding protein

Distribution of the homologs in the orthogroup group_2116

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2116

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q57134 3.9e-21 84 43 3 113 1 HI_1008 Uncharacterized protein HI_1008 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAR9 9.28e-19 78 38 2 111 3 ybaV Uncharacterized protein YbaV Shigella flexneri
P0AAR8 9.28e-19 78 38 2 111 3 ybaV Uncharacterized protein YbaV Escherichia coli (strain K12)
P39694 2.2e-10 58 50 1 53 1 comEA ComE operon protein 1 Bacillus subtilis (strain 168)
Q5RDI0 3.94e-07 50 38 2 68 2 SRBD1 S1 RNA-binding domain-containing protein 1 Pongo abelii
Q8N5C6 5.49e-07 49 38 2 67 1 SRBD1 S1 RNA-binding domain-containing protein 1 Homo sapiens
Q7L9B9 2.19e-06 48 37 1 62 1 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Homo sapiens
Q3MHJ7 3.59e-06 47 43 1 51 2 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Bos taurus
Q3TGW2 4.94e-06 47 38 1 62 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Mus musculus
Q5XI74 5.5e-06 47 38 1 62 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Rattus norvegicus
Q5REP4 6.15e-06 46 50 1 46 2 KIF22 Kinesin-like protein KIF22 Pongo abelii
Q14807 6.52e-06 46 50 1 46 1 KIF22 Kinesin-like protein KIF22 Homo sapiens
P57072 7.13e-06 46 35 2 73 4 NMA0194 Uncharacterized protein NMA0194 Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q51152 9.63e-06 46 35 2 73 4 NMB0075 Uncharacterized protein NMB0075 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q497V5 1.58e-05 45 33 3 98 2 Srbd1 S1 RNA-binding domain-containing protein 1 Mus musculus
Q51062 4.87e-05 44 35 2 73 4 tex Transcriptional accessory protein Tex Neisseria gonorrhoeae
Q3V300 5.1e-05 44 50 1 46 2 Kif22 Kinesin-like protein KIF22 Mus musculus
Q6IND4 7.69e-05 43 38 1 55 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Xenopus laevis
Q6IND4 0.000637 40 46 1 50 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Xenopus laevis
P71353 0.000207 42 35 2 73 4 HI_0568 Uncharacterized protein HI_0568 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A6QPL4 0.000208 42 47 1 46 2 KIF22 Kinesin-like protein KIF22 Bos taurus
Q6TEQ0 0.000213 42 39 1 53 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Danio rerio
Q6TEQ0 0.000661 40 43 1 53 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Danio rerio
Q5I0E8 0.000225 42 47 1 46 2 Kif22 Kinesin-like protein KIF22 Rattus norvegicus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16410
Feature type CDS
Gene -
Product helix-hairpin-helix domain-containing protein
Location 98406 - 98741 (strand: -1)
Length 336 (nucleotides) / 111 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2116
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12836 Helix-hairpin-helix motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1555 Replication, recombination and repair (L) L DNA uptake protein ComE or related DNA-binding protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02237 competence protein ComEA - -

Protein Sequence

MKTKWTSALLLTSALLTGGMFSTSVLAQSAQTENAQTQQVVTQDTDSSRISINTASAEELAQNLSGIGPKKAQSIIEYRTDHGPFTSAEQLMEVKGIGERIFSINSDKIEL

Flanking regions ( +/- flanking 50bp)

AAATTTTGCGACACTCCGTTTTGTGCTAAACACCAAAAGGAGATATCAGCATGAAAACGAAATGGACCTCAGCATTACTCTTAACATCAGCACTGTTAACCGGCGGTATGTTCAGTACATCCGTACTCGCGCAGTCAGCGCAAACGGAGAACGCTCAGACTCAGCAGGTTGTGACTCAGGATACTGACAGCAGCCGGATCAGTATCAATACCGCATCTGCGGAAGAACTGGCGCAGAATCTCAGTGGGATCGGACCGAAAAAAGCACAGAGTATTATCGAGTATCGTACTGATCACGGGCCATTTACGTCCGCCGAGCAACTGATGGAAGTTAAGGGGATCGGTGAACGTATTTTTAGTATAAATAGCGATAAGATAGAGTTATAACATCTGCAGATGTTTACTCTTTTTCCCTCCCTCGTCTGTTGCGGGGGAGG