Orthogroup:group_2153



Homologs in group_2153

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16210 FBDBKF_16210 Morganella morganii S1 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
EHELCC_16245 EHELCC_16245 Morganella morganii S2 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
NLDBIP_17095 NLDBIP_17095 Morganella morganii S4 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
LHKJJB_17015 LHKJJB_17015 Morganella morganii S3 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
HKOGLL_16825 HKOGLL_16825 Morganella morganii S5 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
F4V73_RS17390 F4V73_RS17390 Morganella psychrotolerans - YicC/YloC family endoribonuclease
PMI_RS15575 PMI_RS15575 Proteus mirabilis HI4320 - YicC/YloC family endoribonuclease

Distribution of group_2153 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2153 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2153

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2153.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yicC 5
2 - 2

Product

# Product Occurence
1 Uncharacterized stationary-phase protein YicC, UPF0701 family 5
2 YicC/YloC family endoribonuclease 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1561 7 S Function unknown (S) Uncharacterized stationary-phase protein YicC, UPF0701 family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03755 7 Endoribonuclease YicC-like, N-terminal region
PF08340 7 Endoribonuclease YicC-like, C-terminal

Annotations of the 5 SwissProt hits

Annotation Number of occurrences
Endoribonuclease YicC 1
Endoribonuclease YloC 1
Probable endoribonuclease YicC 3

Protein length

Unique protein length 287

Protein length distribution