Homologs in group_1776

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12955 FBDBKF_12955 90.4 Morganella morganii S1 ybbP putative ABC transporter permease subunit YbbP
EHELCC_06270 EHELCC_06270 90.4 Morganella morganii S2 ybbP putative ABC transporter permease subunit YbbP
NLDBIP_06590 NLDBIP_06590 90.4 Morganella morganii S4 ybbP putative ABC transporter permease subunit YbbP
LHKJJB_03470 LHKJJB_03470 90.4 Morganella morganii S3 ybbP putative ABC transporter permease subunit YbbP
HKOGLL_06945 HKOGLL_06945 90.4 Morganella morganii S5 ybbP putative ABC transporter permease subunit YbbP
PMI_RS10670 PMI_RS10670 62.0 Proteus mirabilis HI4320 ybbP putative ABC transporter permease subunit YbbP

Distribution of the homologs in the orthogroup group_1776

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1776

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77504 0 858 56 2 810 3 ybbP Uncharacterized ABC transporter permease YbbP Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16140
Feature type CDS
Gene ybbP
Product putative ABC transporter permease subunit YbbP
Location 30718 - 33150 (strand: -1)
Length 2433 (nucleotides) / 810 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1776
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02687 FtsX-like permease family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3127 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02004 putative ABC transport system permease protein - -

Protein Sequence

MIWRWFWREWRTPSLLVVWLSLTLAVACVLALGRAGDRINQSVNYQSRDYLAGDLVLRGSHPPETAWLVAAQTNGLRLSQQMSFNTMVFANDVPQLVYVKAADDAYPLYGELETDPPGLKPQPGEILIAPRLAELLSVKPGDKLEVGDTDLKIAGFLIQEPDSGFNPFQMAPRVLIHLNDVNATGAVQPGSRLTYRDMFAGEPDAVTAFQAKFKDTLRIDQRWVTLDQEGGALAKSIDRAQQFLVLSSLLTLLLAIAAVAVAMSHYCRSRHTLIAVLKTLGAGRRELRYWVIGQWAVLMAAAMVAGSLLGLVFDVVLMSLLAPLLPKELPAPGWWPWIWALLTLLAITVLVGARPYRQLMLTQPTRVLRNDVISPVWPLRWYLPLVALIVAGGLAVLTNASVLLWAVLSGVVLIAALLAVVGYGGLWLLAKIPFRQLSLQLAIRRLLRQPGQTLVQTGAFALSFMLLGLLVMVRGDLIGRWQQQLPPDTPNYFLVNMTQAQIEPVNQLLAKHNVTPTEYYPVVLARLSGINGETALAWADARDPGNNTVRRELSLTWHDKLPPMNELADGTWPPKPGEVSIEMEVVKQLGLKVGDTLTFVGDTQPFTATVSSIRQVDWESMRPNFFFIFNQSSLQNQSAMWLTSFHYEGNDGLITAMNRQYPSISIFDTGAMLKQIQTILAQVSRALEAMVVLVLICGVLLLLAQIQVGMNQRRTELVVYRTLGAGKRLLRRTLWCEFALLGAMAGVVAALGAEIALWQLQTRVFDFPWQPQWPLWIALPLIGGFLLSLCGSVLGIRLLGDSQQYRSLQS

Flanking regions ( +/- flanking 50bp)

CGCTGTCAGCGGCGGTTAAAACTCGCTGACGGCAAACTGGAGGAACTGGCATGATCTGGCGCTGGTTCTGGCGGGAGTGGCGCACGCCGTCTCTGCTGGTGGTCTGGCTCTCTCTGACCCTGGCGGTGGCATGTGTGCTGGCGCTCGGGCGGGCAGGGGATCGCATTAATCAAAGTGTTAATTATCAGAGCCGTGATTATTTAGCGGGTGATTTAGTGCTGCGCGGCTCTCATCCGCCGGAAACAGCCTGGCTTGTCGCCGCACAGACAAACGGTCTGCGCCTGAGTCAGCAGATGAGTTTTAACACCATGGTGTTTGCCAATGATGTGCCGCAACTGGTGTATGTCAAAGCCGCAGATGATGCTTATCCTCTTTACGGCGAATTAGAAACTGATCCGCCGGGGCTGAAACCGCAGCCCGGTGAGATCCTGATAGCACCGCGTCTGGCGGAACTGCTTTCGGTGAAACCGGGCGATAAGCTGGAAGTCGGGGATACGGATCTGAAAATAGCCGGTTTTTTGATCCAGGAGCCGGACAGCGGGTTTAATCCGTTTCAGATGGCACCCCGCGTCCTTATTCATTTAAATGATGTGAACGCAACCGGCGCGGTACAGCCCGGCAGCCGCCTGACGTACCGTGATATGTTTGCCGGTGAACCGGATGCGGTGACTGCGTTTCAGGCAAAATTTAAAGATACTCTGCGTATCGATCAGCGCTGGGTGACACTGGATCAGGAAGGCGGGGCGCTGGCGAAATCGATTGATCGTGCACAGCAGTTCCTGGTGCTCTCCTCCCTGCTGACGCTGTTACTGGCGATTGCGGCTGTTGCCGTGGCAATGTCGCACTATTGCCGCAGCCGCCACACATTGATTGCTGTGCTCAAAACACTCGGCGCAGGTCGCCGTGAGCTGCGCTACTGGGTTATCGGACAATGGGCGGTACTGATGGCGGCGGCAATGGTTGCAGGGTCGCTGCTCGGGCTGGTGTTTGATGTTGTGCTGATGAGCCTGCTCGCACCGTTGTTGCCGAAAGAACTGCCTGCTCCGGGCTGGTGGCCGTGGATCTGGGCGCTGCTGACACTGCTGGCGATCACTGTGCTGGTCGGCGCGCGTCCGTACCGTCAACTGATGCTGACGCAGCCGACGCGTGTGCTGCGCAATGATGTTATCTCCCCTGTCTGGCCGCTGCGCTGGTATCTGCCGCTGGTGGCGCTGATTGTTGCGGGTGGGCTGGCTGTGCTGACAAACGCCTCTGTGCTGCTCTGGGCGGTGTTATCGGGAGTGGTGCTGATCGCGGCTCTGCTTGCGGTGGTGGGTTACGGCGGTTTATGGCTGCTGGCGAAAATTCCGTTCCGGCAATTAAGCCTGCAACTGGCTATCCGGCGTTTACTGCGCCAGCCGGGGCAGACGTTGGTACAGACCGGCGCATTTGCGCTCTCTTTTATGCTGCTGGGATTACTGGTGATGGTGCGCGGGGATCTGATCGGGCGCTGGCAGCAACAATTGCCGCCGGACACACCCAATTATTTCCTTGTGAATATGACGCAGGCACAAATTGAACCGGTCAATCAGTTGCTTGCAAAACATAATGTAACGCCGACAGAATATTACCCGGTTGTGCTGGCGCGGTTGTCCGGTATCAACGGCGAAACTGCGCTGGCATGGGCGGATGCGCGCGATCCCGGCAATAATACTGTCCGCCGTGAACTGAGCCTCACCTGGCACGATAAATTACCGCCGATGAATGAACTGGCGGACGGCACCTGGCCGCCGAAGCCCGGGGAAGTCTCCATTGAAATGGAAGTGGTGAAACAGCTCGGGCTGAAAGTGGGCGATACCCTGACGTTTGTCGGTGATACACAGCCATTCACCGCCACGGTCAGCAGTATCCGTCAGGTGGACTGGGAGAGTATGCGCCCGAATTTCTTCTTTATTTTCAATCAGTCATCTTTACAAAATCAGTCGGCGATGTGGCTGACCAGTTTTCATTATGAAGGTAATGACGGGTTAATTACGGCAATGAATCGTCAGTATCCGTCCATCAGTATTTTTGATACCGGCGCGATGCTCAAACAGATCCAGACTATTTTGGCGCAGGTCAGCCGTGCGCTGGAAGCGATGGTTGTGTTGGTACTGATTTGCGGCGTCCTGCTGTTGCTGGCGCAAATCCAGGTCGGGATGAATCAGCGCAGAACGGAACTGGTGGTATACCGCACACTGGGAGCCGGAAAACGCCTGTTGCGGCGCACACTGTGGTGTGAATTTGCCCTGCTGGGCGCGATGGCGGGTGTTGTCGCGGCATTGGGGGCTGAAATCGCCCTGTGGCAGTTACAGACCCGGGTGTTTGATTTTCCGTGGCAGCCGCAGTGGCCGCTGTGGATTGCTCTGCCGCTGATTGGCGGTTTCCTGCTTTCGCTGTGTGGCAGTGTGCTGGGGATCCGATTATTAGGCGATTCACAGCAATACCGCAGTTTGCAAAGTTAACAAAGGCGCATCTGATGACAACAGAGATAATTACCGGCGGCTGTTTGTGC