COG3127


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3127, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Function(s) descr. Secondary metabolites biosynthesis, transport and catabolism (Q)

Occurence in the database

COG3127 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1776 FBDBKF_12955 90715 93147 -1 ybbP putative ABC transporter permease subunit YbbP Morganella morganii S1
1 group_1776 EHELCC_06270 260747 263179 -1 ybbP putative ABC transporter permease subunit YbbP Morganella morganii S2
2 group_1776 NLDBIP_06590 301812 304244 -1 ybbP putative ABC transporter permease subunit YbbP Morganella morganii S4
3 group_1776 LHKJJB_03470 279336 281768 -1 ybbP putative ABC transporter permease subunit YbbP Morganella morganii S3
4 group_1776 HKOGLL_06945 201200 203632 -1 ybbP putative ABC transporter permease subunit YbbP Morganella morganii S5
5 group_769 F4V73_RS11355 413727 414080 1 DUF2500 domain-containing protein Morganella psychrotolerans
6 group_1776 F4V73_RS16140 30718 33150 -1 ybbP putative ABC transporter permease subunit YbbP Morganella psychrotolerans
7 group_2273 PMI_RS00200 63205 64431 1 yedE selenium metabolism membrane protein YedE/FdhT Proteus mirabilis HI4320
8 group_1776 PMI_RS10670 2345830 2348271 -1 ybbP putative ABC transporter permease subunit YbbP Proteus mirabilis HI4320