Homologs in group_1092

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06210 FBDBKF_06210 90.5 Morganella morganii S1 thiB thiamine ABC transporter substrate binding subunit
EHELCC_09255 EHELCC_09255 90.5 Morganella morganii S2 thiB thiamine ABC transporter substrate binding subunit
NLDBIP_09635 NLDBIP_09635 90.5 Morganella morganii S4 thiB thiamine ABC transporter substrate binding subunit
LHKJJB_08120 LHKJJB_08120 90.5 Morganella morganii S3 thiB thiamine ABC transporter substrate binding subunit
HKOGLL_07670 HKOGLL_07670 90.5 Morganella morganii S5 thiB thiamine ABC transporter substrate binding subunit
PMI_RS11485 PMI_RS11485 72.9 Proteus mirabilis HI4320 thiB thiamine ABC transporter substrate binding subunit

Distribution of the homologs in the orthogroup group_1092

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1092

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31550 1.01e-158 450 65 0 310 1 thiB Thiamine-binding periplasmic protein Escherichia coli (strain K12)
Q7CR85 1.89e-156 444 65 0 309 1 thiB Thiamine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8FYV1 5.86e-126 367 52 1 317 3 thiB Thiamine-binding periplasmic protein Brucella suis biovar 1 (strain 1330)
Q57BC4 8.77e-126 366 52 1 317 3 thiB Thiamine-binding periplasmic protein Brucella abortus biovar 1 (strain 9-941)
Q2YLW8 8.77e-126 366 52 1 317 3 thiB Thiamine-binding periplasmic protein Brucella abortus (strain 2308)
Q8YJ02 2.27e-125 365 52 1 317 3 thiB Thiamine-binding periplasmic protein Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P44984 3e-96 291 45 5 318 3 thiB Thiamine-binding periplasmic protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8DLH9 1.45e-08 59 22 15 312 2 idiA Iron deficiency-induced protein A Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)
P72827 4.27e-07 54 23 10 282 1 futA1 Iron uptake protein A1 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P21408 0.001 44 23 9 298 1 fbpA Fe(3+)-binding periplasmic protein Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15705
Feature type CDS
Gene thiB
Product thiamine ABC transporter substrate binding subunit
Location 142220 - 143236 (strand: -1)
Length 1017 (nucleotides) / 338 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1092
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01547 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4143 Coenzyme transport and metabolism (H) H ABC-type thiamine transport system, periplasmic component TbpA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02064 thiamine transport system substrate-binding protein ABC transporters -

Protein Sequence

MLRKLTKNLAAGSIAVLLSLSFHAAADSSKPVLTIYTYDSFVAEWGPGPEIKKNFEAQCGCELKLVGLSDGVTLLNRLRMEGKKSQADIILGLDNNLMQAAQDTGLFKESHVDQSKLVLPVEWHSNTFIPYDYGWFAFIYNKDTLPNPPKSMKELLNSDQKLTIIYQDPRTSTPGLGLLLWMEKLYGTDVAAQWEKMAKKTLTVTKGWSESYGLFLKGEADLVLSYTSSPGYHMLADKKDNYAAALFDEGHYLQVEMAGVLSASKQPELAEQFMQFMLTPGFQNTLPTTNWMYPVIDIPLPPVYDKMPKPVKTLEFDAKDVAKERNQWIRIWQSAVSR

Flanking regions ( +/- flanking 50bp)

CCATGCTGCACTCAGATCCTTTGCCAATCCTTCTCTTACAGGAGCGCAAAGTGTTACGTAAACTGACAAAAAATCTTGCTGCCGGCAGTATTGCCGTCCTTCTCTCTCTCTCTTTTCATGCTGCGGCTGACAGCAGTAAACCGGTTCTGACTATCTACACTTATGACTCTTTTGTCGCGGAGTGGGGACCGGGTCCGGAAATTAAGAAAAACTTTGAAGCACAGTGCGGCTGTGAACTGAAACTGGTCGGGCTGAGTGATGGTGTGACATTACTCAACCGTCTGCGCATGGAAGGAAAAAAATCACAGGCTGATATTATTTTAGGTCTGGATAACAACCTGATGCAGGCGGCACAAGACACCGGGCTGTTTAAAGAGAGTCATGTTGACCAGTCAAAACTGGTACTGCCGGTCGAATGGCACAGCAACACGTTTATCCCTTATGATTACGGCTGGTTTGCCTTTATCTACAACAAAGACACTCTGCCCAACCCGCCGAAAAGCATGAAAGAATTACTGAACAGTGACCAGAAACTCACGATTATTTATCAGGATCCGCGCACCAGCACGCCGGGTCTGGGTTTGCTGTTATGGATGGAAAAACTCTACGGCACAGATGTGGCAGCGCAATGGGAAAAAATGGCGAAGAAAACACTGACGGTCACCAAAGGCTGGAGTGAGTCTTACGGATTATTCCTCAAAGGTGAAGCGGACCTGGTTCTGAGCTACACCTCTTCACCTGGCTATCATATGCTGGCGGATAAAAAAGATAATTATGCCGCCGCACTGTTTGACGAGGGGCATTATCTTCAGGTGGAAATGGCAGGTGTTCTCTCTGCATCCAAACAGCCTGAACTGGCGGAGCAATTTATGCAGTTTATGCTGACACCGGGTTTCCAGAACACATTACCGACCACCAACTGGATGTATCCGGTGATTGATATCCCGCTGCCACCGGTTTATGACAAAATGCCGAAACCGGTGAAAACCCTGGAATTTGATGCAAAAGACGTCGCAAAAGAACGCAACCAGTGGATCCGTATATGGCAAAGCGCAGTCAGCCGTTAATTGCGTCATATCTGATCCCGGGCGCGCTGGCGACAGGTCTTCTGATCCTG