Orthogroup:group_1156


Homologs in group_1156

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06625 FBDBKF_06625 Morganella morganii S1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
EHELCC_09670 EHELCC_09670 Morganella morganii S2 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
NLDBIP_10050 NLDBIP_10050 Morganella morganii S4 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
LHKJJB_07705 LHKJJB_07705 Morganella morganii S3 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
HKOGLL_07255 HKOGLL_07255 Morganella morganii S5 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
F4V73_RS15310 F4V73_RS15310 Morganella psychrotolerans - NAD-binding protein
PMI_RS10430 PMI_RS10430 Proteus mirabilis HI4320 - NAD-binding protein

Distribution of group_1156 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1156 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1156

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1156.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 trkA 5
2 - 2

Product

# Product Occurence
1 Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain 5
2 NAD-binding protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0569 7 PT Inorganic ion transport and metabolism (P)
Signal transduction mechanisms (T)		 Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02254 7 TrkA-N domain
PF07885 7 Ion channel

Annotations of the 41 SwissProt hits

Annotation Number of occurrences
A-type voltage-gated potassium channel KCND2 5
Calcium-activated potassium channel slo-1 1
Calcium-activated potassium channel slowpoke 1
Calcium-gated potassium channel MthK 1
Calcium-gated potassium channel TvoK 1
Cyclic nucleotide-gated potassium channel RHE_CH03180 1
Potassium channel KOR1 1
Potassium channel protein 1 1
Potassium channel subfamily K member 2 3
Potassium voltage-gated channel subfamily A member 1 3
Potassium voltage-gated channel subfamily A member 10 2
Potassium voltage-gated channel subfamily A member 4 5
Potassium voltage-gated channel subfamily A member 5 1
Potassium voltage-gated channel subfamily KQT member 2 3
Probable potassium channel protein 2 1
Putative potassium channel protein YugO 1
Two pore potassium channel b 1
Two-pore potassium channel 1 1
Two-pore potassium channel 4 1
Uncharacterized protein Mfer_0534 1
Voltage-gated potassium channel Kch 1
Voltage-gated potassium channel regulatory subunit KCNG1 3
Voltage-gated potassium channel regulatory subunit KCNG4 2

Protein length

Min length 370
Max length 388
Mean length (sd) 385.4 (6.8)
Median length 388.0

Protein length distribution