Homologs in group_1109

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06320 FBDBKF_06320 83.8 Morganella morganii S1 cpdA 3',5'-cyclic-AMP phosphodiesterase
EHELCC_09365 EHELCC_09365 83.8 Morganella morganii S2 cpdA 3',5'-cyclic-AMP phosphodiesterase
NLDBIP_09745 NLDBIP_09745 83.8 Morganella morganii S4 cpdA 3',5'-cyclic-AMP phosphodiesterase
LHKJJB_08010 LHKJJB_08010 83.8 Morganella morganii S3 cpdA 3',5'-cyclic-AMP phosphodiesterase
HKOGLL_07560 HKOGLL_07560 83.8 Morganella morganii S5 cpdA 3',5'-cyclic-AMP phosphodiesterase
PMI_RS11610 PMI_RS11610 63.9 Proteus mirabilis HI4320 cpdA 3',5'-cyclic-AMP phosphodiesterase

Distribution of the homologs in the orthogroup group_1109

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1109

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEW4 1.5e-119 346 64 1 277 1 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Escherichia coli (strain K12)
P0AEW5 1.5e-119 346 64 1 277 3 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Escherichia coli O157:H7
P44685 6.91e-99 293 51 1 268 3 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8DEI1 3.22e-79 243 46 2 265 2 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Vibrio vulnificus (strain CMCP6)
D4P095 7.89e-61 196 39 2 268 1 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Pseudomonas aeruginosa
Q8YLG0 1.99e-44 154 36 1 234 1 alr5338 3',5'-cyclic-nucleotide phosphodiesterase alr5338 Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q4FQ25 2.17e-36 134 31 7 278 3 Psyc_2036 Probable cyclic nucleotide phosphodiesterase Psyc_2036 Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)
E6RHP9 4.66e-32 122 32 7 240 3 PSM_A2567 Probable cyclic nucleotide phosphodiesterase PSM_A2567 Pseudoalteromonas sp. (strain SM9913)
Q47WJ3 2.25e-27 109 32 9 243 3 icc Probable cyclic nucleotide phosphodiesterase CPS_4178 Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
D5V0N9 2.6e-27 109 31 8 216 3 gpdQ Probable glycerophosphodiester phosphodiesterase GpdQ Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / CCUG 15893 / LMG 7604 / NCTC 12251 / CI)
A5WBU9 3.62e-27 110 29 5 242 3 PsycPRwf_0181 Probable cyclic nucleotide phosphodiesterase PsycPRwf_0181 Psychrobacter sp. (strain PRwf-1)
D5VAD8 6.02e-24 100 29 7 257 3 MCR_0369 Probable cyclic nucleotide phosphodiesterase MCR_0369 Moraxella catarrhalis (strain BBH18)
A5CWE4 3.14e-22 95 29 5 214 3 COSY_0614 Probable cyclic nucleotide phosphodiesterase COSY_0614 Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)
C9RR52 9.19e-22 94 29 9 244 3 Fisuc_1441 Probable cyclic nucleotide phosphodiesterase Fisuc_1441/FSU_1912 Fibrobacter succinogenes (strain ATCC 19169 / S85)
P9WP65 1.09e-21 95 30 3 214 1 Rv0805 cAMP/cGMP dual specificity phosphodiesterase Rv0805 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP64 1.09e-21 95 30 3 214 3 icc cAMP/cGMP dual specificity phosphodiesterase MT0825 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P05675 6.42e-21 92 30 7 261 3 syc0937_d Probable cyclic nucleotide phosphodiesterase syc0937_d Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q93GX3 3.92e-19 87 26 2 212 3 gpdQ Probable glycerophosphodiester phosphodiesterase GpdQ Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)
Q7U7W2 9.24e-19 86 32 7 244 3 icc Probable cyclic nucleotide phosphodiesterase SYNW0868 Parasynechococcus marenigrum (strain WH8102)
Q839Z9 1.4e-18 85 22 3 218 3 CBUA0032 Probable cyclic nucleotide phosphodiesterase CBUA0032 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
D3UX49 5.52e-18 84 24 6 221 3 XBJ1_0953 Probable cyclic nucleotide phosphodiesterase XBJ1_0953 Xenorhabdus bovienii (strain SS-2004)
C1A2D8 2.31e-17 83 31 4 214 3 RER_40650 Probable cyclic nucleotide phosphodiesterase RER_40650 Rhodococcus erythropolis (strain PR4 / NBRC 100887)
A5GLK1 8.61e-17 81 28 6 249 3 SynWH7803_1390 Probable cyclic nucleotide phosphodiesterase SynWH7803_1390 Synechococcus sp. (strain WH7803)
A1AWV4 1.61e-16 79 26 4 212 3 Rmag_0669 Probable cyclic nucleotide phosphodiesterase Rmag_0669 Ruthia magnifica subsp. Calyptogena magnifica
Q6NDI4 2.24e-16 80 25 4 207 3 RPA0124 Probable cyclic nucleotide phosphodiesterase RPA0124 Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
E3GCF1 6.53e-16 79 27 5 222 3 gpdQ Glycerophosphodiester phosphodiesterase GpdQ Enterobacter lignolyticus (strain SCF1)
Q6XBH1 8.16e-15 75 27 5 221 1 gpdQ Glycerophosphodiester phosphodiesterase GpdQ Klebsiella aerogenes

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15600
Feature type CDS
Gene cpdA
Product 3',5'-cyclic-AMP phosphodiesterase
Location 115160 - 115993 (strand: 1)
Length 834 (nucleotides) / 277 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1109
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1409 Signal transduction mechanisms (T) T 3',5'-cyclic AMP phosphodiesterase CpdA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03651 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] Purine metabolism
Metabolic pathways
Biofilm formation - Pseudomonas aeruginosa		 -

Protein Sequence

MEIPLHLAVADGAAVRILQITDTHLFAGETETLLGINTLHSYHAVLDAIVKQQLPTDLVVATGDLVQDQSIRAYQRFTQGVACLPAPCVWLPGNHDYQPSMARELADAGINPAKHILLGEQWQVLLLDSQVQGVPHGELSEYQLAWLDECLAQYSDRHTVVMLHHHPLASGCNWLDQHSLRNSHELADVLVKYQNIDAILCGHIHQDLDMIWNGMRVLATPSTCVQFKPHCTTFTLDTVAPGWRYLELTTGEFPALKTTVHRLDTDEFSPDLGSEGY

Flanking regions ( +/- flanking 50bp)

TAAAACACGTTATTATTATGCGTTAGTTGTTAAAATAACAAGGACATCGATTGGAAATCCCGTTGCATTTGGCCGTAGCTGATGGCGCTGCGGTCAGAATTTTACAGATTACAGATACGCACCTTTTTGCCGGTGAAACTGAGACATTGTTAGGGATCAATACCCTGCACAGTTATCACGCCGTGCTCGATGCTATCGTAAAGCAGCAACTGCCGACCGACCTGGTTGTAGCGACCGGTGATCTGGTTCAGGATCAGAGCATCCGTGCCTATCAGCGGTTTACGCAGGGTGTTGCCTGTTTACCGGCGCCCTGCGTCTGGTTGCCGGGAAATCATGATTATCAGCCGTCAATGGCAAGGGAACTGGCGGATGCCGGTATTAACCCCGCCAAACATATTTTATTAGGTGAACAGTGGCAGGTGCTGCTGCTGGACAGTCAGGTGCAGGGCGTACCGCACGGCGAGCTCAGTGAGTATCAGCTTGCGTGGCTGGATGAGTGCCTGGCACAATATAGTGATCGCCATACGGTTGTGATGCTGCATCATCATCCGCTGGCATCCGGGTGTAACTGGCTTGATCAGCACAGTCTGCGTAATTCGCATGAGCTGGCTGATGTTCTGGTGAAATATCAGAATATTGATGCGATTTTGTGCGGACACATTCATCAGGATCTGGATATGATATGGAACGGTATGCGCGTGCTGGCAACACCGTCAACCTGTGTACAGTTTAAACCGCACTGCACCACCTTTACGCTCGATACTGTGGCACCGGGCTGGCGTTATCTGGAACTGACCACGGGTGAGTTTCCGGCACTGAAAACAACAGTGCACCGCCTGGATACTGACGAATTCAGCCCTGATCTGGGCTCGGAAGGTTACTGATGGCGACGCTCCTTTATCTGCACGGCTTTAACAGCTCTCCATTGTCAGAA