COG1409


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1409, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 3',5'-cyclic AMP phosphodiesterase CpdA
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1409 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1109 FBDBKF_06320 98091 98924 -1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella morganii S1
1 group_1109 EHELCC_09365 98663 99496 -1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella morganii S2
2 group_1109 NLDBIP_09745 98663 99496 -1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella morganii S4
3 group_1109 LHKJJB_08010 117742 118575 1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella morganii S3
4 group_1109 HKOGLL_07560 117742 118575 1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella morganii S5
5 group_1109 F4V73_RS15600 115160 115993 1 cpdA 3',5'-cyclic-AMP phosphodiesterase Morganella psychrotolerans
6 group_1109 PMI_RS11610 2565459 2566298 -1 cpdA 3',5'-cyclic-AMP phosphodiesterase Proteus mirabilis HI4320