Homologs in group_1113

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06345 FBDBKF_06345 85.3 Morganella morganii S1 ygiD 4,5-DOPA dioxygenase extradiol
EHELCC_09390 EHELCC_09390 85.3 Morganella morganii S2 ygiD 4,5-DOPA dioxygenase extradiol
NLDBIP_09770 NLDBIP_09770 85.3 Morganella morganii S4 ygiD 4,5-DOPA dioxygenase extradiol
LHKJJB_07985 LHKJJB_07985 85.3 Morganella morganii S3 ygiD 4,5-DOPA dioxygenase extradiol
HKOGLL_07535 HKOGLL_07535 85.3 Morganella morganii S5 ygiD 4,5-DOPA dioxygenase extradiol
PMI_RS11635 PMI_RS11635 55.6 Proteus mirabilis HI4320 ygiD 4,5-DOPA dioxygenase extradiol

Distribution of the homologs in the orthogroup group_1113

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1113

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24197 8.63e-114 330 60 2 259 1 ygiD 4,5-DOPA dioxygenase extradiol Escherichia coli (strain K12)
Q949R4 8.25e-50 167 38 7 241 2 LIGB Extradiol ring-cleavage dioxygenase Arabidopsis thaliana
I3PFJ9 4.06e-42 148 36 4 232 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
I3PFJ3 7.09e-42 147 36 4 232 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
Q70FG7 2.68e-39 140 36 5 233 1 DODA 4,5-DOPA dioxygenase extradiol Beta vulgaris
B6F0W8 2.51e-34 127 32 7 243 1 DOD 4,5-DOPA dioxygenase extradiol Mirabilis jalapa
Q7XA48 6.86e-34 126 35 8 237 1 DODA 4,5-DOPA dioxygenase extradiol Portulaca grandiflora
O74741 3.06e-20 90 28 10 274 3 SPBC1709.16c 4,5-DOPA dioxygenase extradiol-like protein Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A0A0F7CUE8 2.78e-18 85 26 8 276 1 tasH Dioxygenase tasH Hapsidospora irregularis

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15575
Feature type CDS
Gene ygiD
Product 4,5-DOPA dioxygenase extradiol
Location 109818 - 110597 (strand: 1)
Length 780 (nucleotides) / 259 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1113
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3384 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Aromatic ring-opening dioxygenase, catalytic subunit, LigB family

Kegg Ortholog Annotation(s)

Protein Sequence

MKRLPALFVGHGSPMNVLETNRYTETWRQLGEQLPRPSAILVVSAHWYTQGSWLTSASHPRTIHDFRGFPQALQETQYPAPGSASLVERVKNLLNEDNIGEDNGEWGLDHGSWGILIKMFPDADIPVVQLSIDGSKPAQWYYDTGRKLAALRDEGVLVLGSGNVVHSLRELDWQNAQAAPYPWAESFNTFVRDNLDSDILPHPLINALDREDGKRANPSPEHFLPLLYILGMREGAEPVTVLVDGIESASLSMLSVKVG

Flanking regions ( +/- flanking 50bp)

TTAAATGGCATACACTGATCTCAGTGAACAAATTTTATGCGAGGTTAACAATGAAACGATTACCGGCTCTGTTTGTGGGTCACGGCAGCCCGATGAATGTCCTGGAAACCAACCGTTATACTGAAACCTGGCGGCAACTGGGAGAGCAACTTCCGCGCCCGTCCGCTATTCTTGTGGTGTCGGCGCACTGGTATACACAGGGTTCATGGCTGACTTCCGCTTCACATCCGCGCACTATTCATGATTTTCGCGGGTTCCCGCAGGCCTTACAGGAAACACAATACCCGGCTCCGGGATCAGCGTCGCTGGTGGAACGTGTTAAAAATCTGCTGAATGAAGATAACATCGGCGAAGATAACGGCGAATGGGGACTTGATCACGGCAGTTGGGGGATTTTAATCAAAATGTTCCCGGATGCGGATATCCCGGTGGTTCAATTGAGTATCGACGGCAGCAAACCGGCACAATGGTATTATGATACCGGACGAAAACTGGCGGCATTGCGTGATGAAGGCGTGCTGGTGCTGGGCAGCGGAAACGTGGTGCACAGTCTGCGGGAACTGGACTGGCAGAATGCTCAGGCAGCCCCGTATCCGTGGGCGGAAAGCTTTAATACCTTTGTGCGGGATAATCTGGACAGCGATATCTTACCGCACCCGCTGATTAATGCGCTCGATCGGGAAGACGGCAAACGCGCGAACCCGTCGCCGGAGCACTTCCTGCCACTGCTGTATATTCTGGGAATGCGGGAAGGTGCCGAGCCGGTAACTGTGCTGGTTGACGGGATTGAATCTGCATCACTGAGCATGTTGTCAGTAAAAGTAGGCTGACAATTTTTTGCCATAAAAAATCCCGGGCGCATCAGATGCGCCCGGGATTT