Homologs in group_1148

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06575 FBDBKF_06575 88.1 Morganella morganii S1 trpR trp operon repressor
EHELCC_09620 EHELCC_09620 88.1 Morganella morganii S2 trpR trp operon repressor
NLDBIP_10000 NLDBIP_10000 88.1 Morganella morganii S4 trpR trp operon repressor
LHKJJB_07755 LHKJJB_07755 88.1 Morganella morganii S3 trpR trp operon repressor
HKOGLL_07305 HKOGLL_07305 88.1 Morganella morganii S5 trpR trp operon repressor
PMI_RS18480 PMI_RS18480 66.3 Proteus mirabilis HI4320 trpR trp operon repressor

Distribution of the homologs in the orthogroup group_1148

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1148

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N902 6.43e-44 141 65 1 105 3 trpR Trp operon repressor Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A8G9J2 1.44e-43 140 65 1 105 3 trpR Trp operon repressor Serratia proteamaculans (strain 568)
A1JJB6 9.76e-38 125 60 1 108 3 trpR Trp operon repressor Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A9MR96 1.25e-37 125 62 0 94 3 trpR Trp operon repressor Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5Y266 7.18e-37 123 66 0 95 3 trpR Trp operon repressor Klebsiella pneumoniae (strain 342)
C6DF27 2.3e-36 122 62 1 106 3 trpR Trp operon repressor Pectobacterium carotovorum subsp. carotovorum (strain PC1)
P39439 2.38e-36 122 64 0 97 3 trpR Trp operon repressor Klebsiella aerogenes
Q6D0A0 4.46e-36 121 62 1 106 3 trpR Trp operon repressor Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A6TI07 6.28e-36 121 65 0 94 3 trpR Trp operon repressor Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q66EU5 6.51e-36 121 61 0 97 3 trpR Trp operon repressor Yersinia pseudotuberculosis serotype I (strain IP32953)
P58700 6.51e-36 121 61 0 97 3 trpR Trp operon repressor Yersinia pestis
Q3YU01 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella sonnei (strain Ss046)
P0A883 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella flexneri
Q0SX19 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella flexneri serotype 5b (strain 8401)
Q327K2 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella dysenteriae serotype 1 (strain Sd197)
Q31SU5 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella boydii serotype 4 (strain Sb227)
B2TZS6 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I6P1 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain SE11)
P0A881 1.34e-35 120 65 0 94 1 trpR Trp operon repressor Escherichia coli (strain K12)
B1IS26 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A8C2 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O9:H4 (strain HS)
B1XFK3 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain K12 / DH10B)
C4ZT75 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain K12 / MC4100 / BW2952)
B7LXV6 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O8 (strain IAI1)
B5Z4S5 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O157:H7 (strain EC4115 / EHEC)
P0A882 1.34e-35 120 65 0 94 1 trpR Trp operon repressor Escherichia coli O157:H7
B7LEN9 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain 55989 / EAEC)
A7ZVT5 1.34e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O139:H28 (strain E24377A / ETEC)
B7LNT5 1.37e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B7NH68 1.37e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7NW74 1.37e-35 120 65 0 94 3 trpR Trp operon repressor Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Q1R248 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain UTI89 / UPEC)
Q8FA42 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0T8R8 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AJW2 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O1:K1 / APEC
B7N2W3 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O81 (strain ED1a)
B7MNK2 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UR23 2.85e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B1LEK0 3.11e-35 119 65 0 94 3 trpR Trp operon repressor Escherichia coli (strain SMS-3-5 / SECEC)
P58699 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella typhi
B5BAK9 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella paratyphi A (strain AKU_12601)
C0Q8F3 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella paratyphi C (strain RKS4594)
Q5PK31 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57G28 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella choleraesuis (strain SC-B67)
B5F541 3.15e-35 119 65 0 94 3 trpR Trp operon repressor Salmonella agona (strain SL483)
Q2NVZ9 1.45e-34 117 63 0 87 3 trpR Trp operon repressor Sodalis glossinidius (strain morsitans)
P39440 1.52e-34 117 64 0 94 3 trpR Trp operon repressor Enterobacter cloacae
A9N7F3 1.72e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
P37444 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TU53 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella schwarzengrund (strain CVM19633)
B4T4I7 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella newport (strain SL254)
B4TH16 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella heidelberg (strain SL476)
B5R9W1 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5FTD7 2e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella dublin (strain CT_02021853)
B5R3B5 2.07e-34 117 64 0 94 3 trpR Trp operon repressor Salmonella enteritidis PT4 (strain P125109)
A7MIH6 2.32e-33 114 64 0 94 3 trpR Trp operon repressor Cronobacter sakazakii (strain ATCC BAA-894)
B6EGC9 2.25e-24 92 50 0 90 3 trpR Trp operon repressor homolog Aliivibrio salmonicida (strain LFI1238)
Q7MNK8 3.75e-24 91 51 1 100 3 trpR Trp operon repressor homolog Vibrio vulnificus (strain YJ016)
Q8DEU5 3.75e-24 91 51 1 100 3 trpR Trp operon repressor homolog Vibrio vulnificus (strain CMCP6)
Q9KU28 2.05e-23 89 52 0 89 3 trpR Trp operon repressor homolog Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5E7E2 1.07e-22 87 48 0 90 3 trpR Trp operon repressor homolog Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5FAQ3 1.14e-22 87 48 0 90 3 trpR Trp operon repressor homolog Aliivibrio fischeri (strain MJ11)
Q6LUG2 3.89e-21 83 48 0 84 3 trpR Trp operon repressor homolog Photobacterium profundum (strain SS9)
A7MTC2 7.36e-21 82 45 1 96 3 trpR Trp operon repressor homolog Vibrio campbellii (strain ATCC BAA-1116)
B7VJN4 2.29e-20 81 44 0 88 3 trpR Trp operon repressor homolog Vibrio atlanticus (strain LGP32)
Q87S71 2.56e-20 81 45 1 96 3 trpR Trp operon repressor homolog Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9CNU9 3.27e-20 81 44 0 86 3 trpR Trp operon repressor homolog Pasteurella multocida (strain Pm70)
A6VPL3 9.41e-17 72 40 0 86 3 trpR Trp operon repressor homolog Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
P44889 1.83e-15 68 38 0 86 3 trpR Trp operon repressor homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UHY0 1.83e-15 68 38 0 86 3 trpR Trp operon repressor homolog Haemophilus influenzae (strain PittGG)
A5UDP4 1.83e-15 68 38 0 86 3 trpR Trp operon repressor homolog Haemophilus influenzae (strain PittEE)
Q4QM70 1.83e-15 68 38 0 86 3 trpR Trp operon repressor homolog Haemophilus influenzae (strain 86-028NP)
B0BBF0 2.01e-14 66 35 0 92 3 trpR Trp operon repressor homolog Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis)
B0B9S0 2.01e-14 66 35 0 92 3 trpR Trp operon repressor homolog Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
O84171 3.35e-14 65 35 0 92 3 trpR Trp operon repressor homolog Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q3KMJ6 3.35e-14 65 35 0 92 3 trpR Trp operon repressor homolog Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13)
Q0I456 6.58e-14 65 41 0 86 3 trpR Trp operon repressor homolog Histophilus somni (strain 129Pt)
B0UT98 8.08e-14 65 41 0 86 3 trpR Trp operon repressor homolog Histophilus somni (strain 2336)
Q65S87 3.96e-13 63 41 0 84 3 trpR Trp operon repressor homolog Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q254S6 1.11e-12 62 37 1 91 3 trpR Trp operon repressor homolog Chlamydia felis (strain Fe/C-56)
Q822W7 4.01e-11 57 37 1 89 3 trpR Trp operon repressor homolog Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC)
Q9PC61 1.29e-07 48 32 1 86 3 trpR Trp operon repressor homolog Xylella fastidiosa (strain 9a5c)
Q87D16 1.49e-07 48 32 1 86 3 trpR Trp operon repressor homolog Xylella fastidiosa (strain Temecula1 / ATCC 700964)
B2I4R3 1.49e-07 48 32 1 86 3 trpR Trp operon repressor homolog Xylella fastidiosa (strain M23)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15365
Feature type CDS
Gene trpR
Product trp operon repressor
Location 60067 - 60390 (strand: 1)
Length 324 (nucleotides) / 107 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1148
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01371 Trp repressor protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2973 Transcription (K) K Trp operon repressor

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03720 TrpR family transcriptional regulator, trp operon repressor - -

Protein Sequence

MTAVHLQDSASDENSDWQRFVRLLGNAYSQDIESHIFQLLFTPDERTALGTRVRIVEELLRGKMSQRELKNELGVGIATITRGSNSLKYAPETVKAWLEQELMTKKG

Flanking regions ( +/- flanking 50bp)

GTACTAGTTAATGAGTATATTTTGTACTCCCGGTCAATATGGGGTAACACATGACAGCGGTTCACCTTCAGGACAGCGCGTCCGACGAGAACAGTGACTGGCAGCGCTTTGTCCGGTTATTGGGTAACGCATATTCGCAGGATATTGAATCCCATATTTTTCAGCTTCTTTTTACGCCAGATGAACGCACCGCTCTCGGCACCCGCGTCCGTATTGTGGAAGAACTGCTGCGCGGTAAAATGAGCCAGCGCGAGCTGAAAAATGAATTAGGTGTGGGGATTGCCACTATCACCCGCGGCTCCAACAGCCTGAAATATGCACCGGAAACAGTTAAAGCCTGGCTGGAACAGGAACTGATGACAAAAAAAGGGTGAGCAATCATCTTTTATTCTCCCGCCGGTAGTGCGTCGGGATCTTGAACGAT