Orthogroup:group_1208


Homologs in group_1208

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07015 FBDBKF_07015 Morganella morganii S1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
EHELCC_03955 EHELCC_03955 Morganella morganii S2 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
NLDBIP_03955 NLDBIP_03955 Morganella morganii S4 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
LHKJJB_09785 LHKJJB_09785 Morganella morganii S3 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
HKOGLL_09190 HKOGLL_09190 Morganella morganii S5 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
F4V73_RS01205 F4V73_RS01205 Morganella psychrotolerans artJ arginine ABC transporter substrate-binding protein
PMI_RS03350 PMI_RS03350 Proteus mirabilis HI4320 artJ arginine ABC transporter substrate-binding protein

Distribution of group_1208 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1208 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1208

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1208.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hisJ 5
2 artJ 2

Product

# Product Occurence
1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain 5
2 arginine ABC transporter substrate-binding protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0834 7 ET Amino acid transport and metabolism (E)
Signal transduction mechanisms (T)		 ABC-type amino acid transport/signal transduction system, periplasmic component/domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02030 6 polar amino acid transport system substrate-binding protein - -
K09997 1 arginine transport system substrate-binding protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00497 7 Bacterial extracellular solute-binding proteins, family 3

Annotations of the 52 SwissProt hits

Annotation Number of occurrences
ABC transporter D-alanine-binding periplasmic protein 1
ABC transporter arginine-binding protein 1
ABC transporter arginine-binding protein 1 1
ABC transporter glutamine-binding protein GlnH 1
Amino-acid-binding protein AabA 1
Arginine-binding extracellular protein ArtP 1
Arginine-binding periplasmic protein 1
Arginine-binding protein ArgT 1
Cyclohexadienyl dehydratase 1
General L-amino acid-binding periplasmic protein AapJ 1
Glutamate-binding protein GluB 2
Glutamate/aspartate import solute-binding protein 2
Glutamine-binding periplasmic protein 3
Glutamine-binding protein 1
Histidine-binding periplasmic protein 4
L-arginine-binding protein 1
L-cystine-binding protein TcyA 1
L-cystine-binding protein TcyJ 3
L-cystine-binding protein TcyK 1
L-glutamate/L-aspartate-binding protein 1
Lysine/arginine/ornithine-binding periplasmic protein 2
Major cell-binding factor 2
Membrane-bound lytic murein transglycosylase F 3
Nopaline-binding periplasmic protein 1
Octopine-binding periplasmic protein 3
Probable ABC transporter arginine-binding protein ArtJ 2
Probable ABC transporter extracellular-binding protein YckB 1
Probable amino-acid ABC transporter periplasmic-binding protein y4tE 1
Probable amino-acid ABC transporter-binding protein HI_1080 1
Probable amino-acid-binding protein YxeM 1
Probable histidine-binding protein 2
Putative ABC transporter arginine-binding protein 2 1
Putative amino-acid ABC transporter-binding protein PatH 1
Putative sensor protein Sfri_3689 1
Virulence sensor protein BvgS 1

Protein length

Unique protein length 244

Protein length distribution