COG2973


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2973, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Trp operon repressor
Function(s) descr. Transcription (K)

Occurence in the database

COG2973 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1148 FBDBKF_06575 154400 154705 -1 trpR trp operon repressor Morganella morganii S1
1 group_1148 EHELCC_09620 154972 155277 -1 trpR trp operon repressor Morganella morganii S2
2 group_1148 NLDBIP_10000 154972 155277 -1 trpR trp operon repressor Morganella morganii S4
3 group_1148 LHKJJB_07755 61961 62266 1 trpR trp operon repressor Morganella morganii S3
4 group_1148 HKOGLL_07305 61961 62266 1 trpR trp operon repressor Morganella morganii S5
5 group_1148 F4V73_RS15365 60067 60390 1 trpR trp operon repressor Morganella psychrotolerans
6 group_1148 PMI_RS18480 4058961 4059272 1 trpR trp operon repressor Proteus mirabilis HI4320