Homologs in group_1156

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06625 FBDBKF_06625 85.8 Morganella morganii S1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
EHELCC_09670 EHELCC_09670 85.8 Morganella morganii S2 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
NLDBIP_10050 NLDBIP_10050 85.8 Morganella morganii S4 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
LHKJJB_07705 LHKJJB_07705 85.8 Morganella morganii S3 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
HKOGLL_07255 HKOGLL_07255 85.8 Morganella morganii S5 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
PMI_RS10430 PMI_RS10430 46.1 Proteus mirabilis HI4320 - NAD-binding protein

Distribution of the homologs in the orthogroup group_1156

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1156

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31069 1.65e-55 191 36 8 336 1 kch Voltage-gated potassium channel Kch Escherichia coli (strain K12)
P56509 1.52e-11 69 27 4 201 4 Mfer_0534 Uncharacterized protein Mfer_0534 Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S)
Q58752 3.55e-11 67 23 3 197 4 MJ1357 Probable potassium channel protein 2 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O27564 5.79e-09 60 26 5 191 1 mthK Calcium-gated potassium channel MthK Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q57604 4.43e-07 54 25 5 168 4 MJ0138.1 Potassium channel protein 1 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q795M8 1.15e-06 53 25 6 209 4 yugO Putative potassium channel protein YugO Bacillus subtilis (strain 168)
Q979Z2 3e-06 52 24 7 215 1 tvoK Calcium-gated potassium channel TvoK Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
Q8TDN1 5.69e-05 48 32 2 77 1 KCNG4 Voltage-gated potassium channel regulatory subunit KCNG4 Homo sapiens
Q9UIX4 6.28e-05 48 25 3 114 1 KCNG1 Voltage-gated potassium channel regulatory subunit KCNG1 Homo sapiens
Q95V25 6.78e-05 48 30 0 81 1 slo-1 Calcium-activated potassium channel slo-1 Caenorhabditis elegans
D4AD53 9.02e-05 48 26 3 112 1 Kcng1 Voltage-gated potassium channel regulatory subunit KCNG1 Rattus norvegicus
A2BDX4 0.000102 48 26 3 112 3 Kcng1 Voltage-gated potassium channel regulatory subunit KCNG1 Mus musculus
Q80XM3 0.000331 46 32 2 77 2 Kcng4 Voltage-gated potassium channel regulatory subunit KCNG4 Mus musculus
Q9FWX6 0.000378 45 32 2 77 2 TPK4 Two-pore potassium channel 4 Arabidopsis thaliana
Q2K5E1 0.000573 45 29 7 168 3 RHE_CH03180 Cyclic nucleotide-gated potassium channel RHE_CH03180 Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15310
Feature type CDS
Gene -
Product NAD-binding protein
Location 47216 - 48382 (strand: 1)
Length 1167 (nucleotides) / 388 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1156
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02254 TrkA-N domain
PF07885 Ion channel

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0569 Inorganic ion transport and metabolism (P)
Signal transduction mechanisms (T)		 PT Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain

Protein Sequence

MLINKLMAGVRGLLNLRVILSLLLLADGVMILSPVLFSYTGDIAWKDGGFTAWLQSLGFMKLLDIPRFMMGLLLVLLSLLMLTGARIAWLFSLFILLIMALMDLGLAREYSGQGYFSLALLIANGCLWRKFPLHSLTSAGVVAISSIILLVVYSVFGTLYLGNEFQPHVTDISSAFYFALVCMTTVGFGDIIPISTEARMFTLTVVVFGITIFTTSIVYIVGVVLRGTREIVKKRLLHMKEHYVVIGANPLAVNLYKGLKKRGLEAVVICTADQKANFPDGTIAVIGDGADAATLGSANVKDARCVMAVSDSDADNTFTLLAVKQLAGEGVKTVTIVNQEENRGKMRLLHADMSFSLSQLGSEVLMKMLCGENIDNNVMADILLAKTP

Flanking regions ( +/- flanking 50bp)

TGCCTAATCAGGATATTATGCCGGAACACCGTCAGTAATAGGGGAGAGATATGCTGATTAATAAATTGATGGCAGGGGTACGCGGATTACTGAATCTGAGAGTGATCCTATCATTACTGCTGCTGGCTGACGGAGTAATGATCCTGTCGCCGGTTCTGTTTTCCTACACCGGTGATATCGCCTGGAAGGATGGTGGCTTCACCGCGTGGCTGCAATCCCTCGGGTTTATGAAGCTGCTGGATATTCCCCGCTTTATGATGGGGTTACTGCTGGTGCTGCTGTCACTGCTGATGCTGACCGGGGCGCGTATCGCGTGGCTGTTCTCTCTGTTTATTCTGCTGATCATGGCGCTGATGGATCTGGGACTGGCGCGTGAGTATTCCGGACAGGGCTATTTCTCTCTGGCACTTTTGATTGCCAACGGCTGCCTGTGGCGGAAATTCCCGCTTCACAGTCTGACCAGCGCCGGGGTTGTCGCGATAAGCAGCATTATCCTGCTGGTGGTCTATTCTGTGTTCGGCACACTGTATCTCGGTAACGAGTTCCAGCCGCATGTGACGGATATCTCCTCGGCGTTCTATTTTGCCCTGGTCTGTATGACAACGGTCGGGTTCGGGGACATTATCCCGATAAGCACTGAAGCGCGGATGTTTACCCTGACGGTGGTTGTTTTCGGGATCACTATCTTTACCACATCCATTGTCTACATTGTGGGTGTTGTTCTGCGCGGCACGCGTGAGATTGTCAAAAAGAGGTTGTTACACATGAAAGAGCACTATGTTGTCATCGGCGCGAACCCGCTGGCGGTCAATCTTTATAAAGGACTGAAAAAACGCGGCCTGGAAGCGGTTGTTATCTGTACGGCTGATCAGAAAGCCAATTTCCCGGACGGCACGATTGCCGTGATCGGTGACGGCGCGGATGCCGCTACACTGGGCAGCGCCAATGTGAAAGATGCGCGCTGTGTTATGGCGGTCAGTGACAGTGATGCGGACAACACATTCACTCTGCTGGCAGTGAAACAGCTTGCCGGGGAAGGGGTGAAAACAGTGACCATTGTGAATCAGGAAGAGAACCGCGGAAAAATGCGCCTGCTGCATGCGGACATGTCATTTTCCCTGTCACAACTCGGCAGTGAAGTGCTGATGAAAATGCTGTGCGGTGAAAATATTGATAACAATGTGATGGCTGATATTTTATTAGCCAAAACGCCGTAAGCAGACCTGCCGGTGAAACATAAAAATATTAACCTGAGCCACGGGATTTC