COG0569
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0569, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain |
---|---|
Function(s) descr. | Inorganic ion transport and metabolism (P) Signal transduction mechanisms (T) |
Occurence in the database
COG0569 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1156 | FBDBKF_06625 | 165942 | 167108 | -1 | trkA | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain | Morganella morganii S1 |
1 | group_2369 | FBDBKF_19095 | 7057 | 8433 | 1 | trkA | Trk system potassium transporter TrkA | Morganella morganii S1 |
2 | group_1156 | EHELCC_09670 | 166514 | 167680 | -1 | trkA | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain | Morganella morganii S2 |
3 | group_2369 | EHELCC_18840 | 7057 | 8433 | 1 | trkA | Trk system potassium transporter TrkA | Morganella morganii S2 |
4 | group_1156 | NLDBIP_10050 | 166514 | 167680 | -1 | trkA | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain | Morganella morganii S4 |
5 | group_2369 | NLDBIP_18855 | 7057 | 8433 | 1 | trkA | Trk system potassium transporter TrkA | Morganella morganii S4 |
6 | group_1156 | LHKJJB_07705 | 49558 | 50724 | 1 | trkA | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain | Morganella morganii S3 |
7 | group_2369 | LHKJJB_18710 | 7057 | 8433 | 1 | trkA | Trk system potassium transporter TrkA | Morganella morganii S3 |
8 | group_1156 | HKOGLL_07255 | 49558 | 50724 | 1 | trkA | Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain | Morganella morganii S5 |
9 | group_2369 | HKOGLL_18445 | 7057 | 8433 | 1 | trkA | Trk system potassium transporter TrkA | Morganella morganii S5 |
10 | group_1156 | F4V73_RS15310 | 47216 | 48382 | 1 | NAD-binding protein | Morganella psychrotolerans | |
11 | group_2369 | F4V73_RS19070 | 21964 | 23340 | -1 | trkA | Trk system potassium transporter TrkA | Morganella psychrotolerans |
12 | group_1156 | PMI_RS10430 | 2291451 | 2292563 | -1 | NAD-binding protein | Proteus mirabilis HI4320 | |
13 | group_2369 | PMI_RS16295 | 3597523 | 3598899 | -1 | trkA | Trk system potassium transporter TrkA | Proteus mirabilis HI4320 |