Homologs in group_1216

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06625 FBDBKF_06625 100.0 Morganella morganii S1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
EHELCC_09670 EHELCC_09670 100.0 Morganella morganii S2 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
NLDBIP_10050 NLDBIP_10050 100.0 Morganella morganii S4 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
HKOGLL_07255 HKOGLL_07255 100.0 Morganella morganii S5 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
F4V73_RS15310 F4V73_RS15310 85.8 Morganella psychrotolerans - NAD-binding protein
PMI_RS10430 PMI_RS10430 46.6 Proteus mirabilis HI4320 - NAD-binding protein

Distribution of the homologs in the orthogroup group_1216

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1216

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31069 5.7e-60 202 33 6 375 1 kch Voltage-gated potassium channel Kch Escherichia coli (strain K12)
P56509 2.26e-12 72 26 6 231 4 Mfer_0534 Uncharacterized protein Mfer_0534 Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S)
O27564 4.94e-12 70 26 5 193 1 mthK Calcium-gated potassium channel MthK Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58752 1.21e-11 68 23 4 232 4 MJ1357 Probable potassium channel protein 2 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q57604 2.1e-07 55 24 3 166 4 MJ0138.1 Potassium channel protein 1 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q979Z2 3.08e-06 52 23 4 208 1 tvoK Calcium-gated potassium channel TvoK Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
Q795M8 3.59e-06 52 26 4 167 4 yugO Putative potassium channel protein YugO Bacillus subtilis (strain 168)
Q8TDN1 6.61e-06 51 35 2 77 1 KCNG4 Voltage-gated potassium channel regulatory subunit KCNG4 Homo sapiens
Q95V25 2.72e-05 50 30 0 82 1 slo-1 Calcium-activated potassium channel slo-1 Caenorhabditis elegans
Q80XM3 3.35e-05 49 35 2 77 2 Kcng4 Voltage-gated potassium channel regulatory subunit KCNG4 Mus musculus
Q9NZV8 6.07e-05 48 28 2 112 1 KCND2 A-type voltage-gated potassium channel KCND2 Homo sapiens
Q8HYZ1 7.96e-05 48 28 2 112 2 KCND2 A-type voltage-gated potassium channel KCND2 Mustela putorius furo
Q9Z0V2 0.000108 48 28 2 112 1 Kcnd2 A-type voltage-gated potassium channel KCND2 Mus musculus
Q9UIX4 0.000109 47 25 3 114 1 KCNG1 Voltage-gated potassium channel regulatory subunit KCNG1 Homo sapiens
Q63881 0.000115 47 28 2 112 1 Kcnd2 A-type voltage-gated potassium channel KCND2 Rattus norvegicus
D4AD53 0.000125 47 26 3 112 1 Kcng1 Voltage-gated potassium channel regulatory subunit KCNG1 Rattus norvegicus
A2BDX4 0.000136 47 26 3 112 3 Kcng1 Voltage-gated potassium channel regulatory subunit KCNG1 Mus musculus
Q2K5E1 0.000144 47 30 8 171 3 RHE_CH03180 Cyclic nucleotide-gated potassium channel RHE_CH03180 Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
Q653P0 0.000232 47 28 2 114 2 Os06g0250600 Potassium channel KOR1 Oryza sativa subsp. japonica
Q03720 0.000388 46 35 0 71 1 slo Calcium-activated potassium channel slowpoke Drosophila melanogaster
P59995 0.000411 46 27 2 112 2 KCND2 A-type voltage-gated potassium channel KCND2 Oryctolagus cuniculus
Q9FWX6 0.000587 45 33 2 77 2 TPK4 Two-pore potassium channel 4 Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_07705
Feature type CDS
Gene trkA
Product Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain
Location 49558 - 50724 (strand: 1)
Length 1167 (nucleotides) / 388 (amino acids)
In genomic island -

Contig

Accession ZDB_364
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1216
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02254 TrkA-N domain
PF07885 Ion channel

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0569 Inorganic ion transport and metabolism (P)
Signal transduction mechanisms (T)		 PT Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain

Protein Sequence

MQSNLLKTGLHKLLSLRVILSVLLFIDGVMILSPVLFSYTGDIAWQDGGFTAWLQSLGFIKLLDIPRFMLGLLLALLALLMLTGARIAWLFSLFILLTMVLMDLGLAREYSLQGLFSLALLIASGCLWRQFPHHSLTSAGVVAVSSIILLVVYSVFGTLYLGNEFQPHVTDISAAFYFALVCMTTVGFGDIIPISVEARMFTLTVVVFGITIFTTSIVYIVGVVLRGTREIVKKRLLHMKEHYVVIGANPLAVNIYKGLKKRGLQVVVICSDEDKKHFPDGTVTVAGDSADAVTLNEANVKDARCVMAIGDNDADNTFALLAVKQLAGEGVKTVTVVNQEENSDKMRLLHADMTFSLSQLGSEVLMKMLCGESINNSVMADILLAKAP

Flanking regions ( +/- flanking 50bp)

TGCCGAATCAGGACATCATGCCGGAACACCGTCAGTAAAAGGGGAGAAATATGCAGAGTAATCTACTGAAGACAGGGTTACATAAATTACTGAGTCTGCGGGTGATCCTGTCGGTGCTGCTGTTTATTGACGGGGTGATGATCCTGTCGCCGGTGCTGTTTTCCTATACCGGGGATATTGCCTGGCAGGACGGCGGTTTCACCGCGTGGTTACAGTCGCTCGGGTTTATAAAACTGCTGGATATTCCCCGCTTTATGCTGGGGTTACTGCTGGCACTGCTGGCGCTGCTGATGCTGACCGGCGCACGCATCGCCTGGCTGTTCTCCCTGTTTATCCTGCTCACGATGGTACTGATGGATCTGGGGCTGGCCCGGGAATACTCACTGCAGGGGTTGTTCTCGCTGGCGCTGCTGATTGCGTCCGGCTGCCTGTGGCGGCAGTTCCCGCATCACAGCCTGACCAGTGCCGGCGTGGTGGCGGTCAGCAGTATTATCCTGCTGGTGGTCTATTCCGTCTTCGGCACCCTGTATCTCGGCAATGAGTTCCAGCCGCATGTCACGGATATCTCAGCGGCCTTCTACTTTGCCCTGGTCTGTATGACCACGGTCGGTTTCGGGGACATCATCCCGATCAGCGTGGAAGCGCGGATGTTTACCCTGACGGTGGTGGTGTTCGGTATCACGATCTTCACCACATCCATTGTGTACATTGTGGGTGTCGTCCTGCGCGGCACACGCGAGATTGTCAAAAAGAGGTTGTTACACATGAAAGAGCATTATGTTGTTATCGGCGCGAATCCGCTGGCGGTCAATATCTATAAAGGACTGAAAAAACGCGGCTTGCAGGTGGTGGTGATCTGTTCTGACGAGGACAAAAAGCACTTCCCTGACGGCACCGTGACCGTGGCCGGTGACAGTGCCGATGCCGTGACCCTGAATGAAGCCAATGTCAAAGATGCCCGTTGCGTGATGGCCATCGGTGATAACGACGCGGATAACACCTTTGCGCTGCTGGCGGTGAAACAGCTGGCCGGTGAAGGCGTGAAAACCGTGACTGTGGTGAATCAGGAAGAGAACAGCGACAAAATGCGCCTGCTGCATGCGGATATGACCTTCTCCCTGTCACAGCTCGGCAGTGAAGTGCTGATGAAAATGCTGTGCGGCGAGAGCATCAATAACAGTGTTATGGCTGACATCTTATTAGCCAAAGCGCCATAAGCAGGGCCGGTTGTGAAGCATAAAGAAAAAAAAATAAATCTGAGCCACGG