Homologs in group_24

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17 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04810 FBDBKF_04810 50.0 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_11115 FBDBKF_11115 60.5 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_17770 FBDBKF_17770 94.8 Morganella morganii S1 nupC Nucleoside permease NupC
EHELCC_05110 EHELCC_05110 60.5 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_06100 EHELCC_06100 50.0 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_09795 EHELCC_09795 94.8 Morganella morganii S2 nupC Nucleoside permease NupC
NLDBIP_05430 NLDBIP_05430 60.5 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_06420 NLDBIP_06420 50.0 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_10175 NLDBIP_10175 94.8 Morganella morganii S4 nupC Nucleoside permease NupC
LHKJJB_02310 LHKJJB_02310 60.5 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_03300 LHKJJB_03300 50.0 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_07580 LHKJJB_07580 94.8 Morganella morganii S3 nupC Nucleoside permease NupC
HKOGLL_06775 HKOGLL_06775 50.0 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_07130 HKOGLL_07130 94.8 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_15690 HKOGLL_15690 60.5 Morganella morganii S5 nupC Nucleoside permease NupC
F4V73_RS08155 F4V73_RS08155 61.2 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
PMI_RS11960 PMI_RS11960 80.0 Proteus mirabilis HI4320 - NupC/NupG family nucleoside CNT transporter

Distribution of the homologs in the orthogroup group_24

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_24

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44742 0.0 522 64 4 420 3 HI_0519 Uncharacterized transporter HI_0519 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O25792 2.12e-160 461 57 3 419 3 nupC Nucleoside permease NupC Helicobacter pylori (strain ATCC 700392 / 26695)
O32115 2.83e-156 450 57 2 416 3 yutK Uncharacterized transporter YutK Bacillus subtilis (strain 168)
P33021 8.78e-127 375 48 3 419 1 nupX Putative nucleoside permease NupX Escherichia coli (strain K12)
P33024 1.2e-119 357 47 2 419 1 psuT Putative pseudouridine transporter Escherichia coli (strain K12)
Q9UA35 1.16e-90 291 36 3 415 2 SLC28A3 Solute carrier family 28 member 3 Eptatretus stoutii
Q9HAS3 1.3e-86 280 41 4 361 1 SLC28A3 Solute carrier family 28 member 3 Homo sapiens
E9PXX9 6.69e-86 277 37 3 412 2 Slc28a1 Sodium/nucleoside cotransporter 1 Mus musculus
Q8VIH3 7.01e-86 279 40 4 365 2 Slc28a3 Solute carrier family 28 member 3 Rattus norvegicus
Q62674 6.83e-85 275 36 3 412 1 Slc28a1 Sodium/nucleoside cotransporter 1 Rattus norvegicus
Q9ERH8 2.36e-84 275 40 4 365 2 Slc28a3 Solute carrier family 28 member 3 Mus musculus
O62667 1.34e-83 271 37 3 412 2 SLC28A1 Sodium/nucleoside cotransporter 1 Sus scrofa
O00337 4.99e-83 270 36 3 412 1 SLC28A1 Sodium/nucleoside cotransporter 1 Homo sapiens
O88627 7.7e-83 270 36 2 419 1 Slc28a2 Sodium/nucleoside cotransporter 2 Mus musculus
O43868 1.29e-82 269 36 3 412 1 SLC28A2 Sodium/nucleoside cotransporter 2 Homo sapiens
Q62773 1.89e-82 269 36 4 421 1 Slc28a2 Sodium/nucleoside cotransporter 2 Rattus norvegicus
Q9MZT2 1.4e-78 258 33 2 419 2 SLC28A1 Sodium/nucleoside cotransporter 1 Oryctolagus cuniculus
P39141 1.34e-58 199 32 7 414 2 nupC Nucleoside permease NupC Bacillus subtilis (strain 168)
P0AFF2 5.74e-58 197 32 7 416 1 nupC Nucleoside permease NupC Escherichia coli (strain K12)
P0AFF3 5.74e-58 197 32 7 416 3 nupC Nucleoside permease NupC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P42312 6.48e-32 128 26 8 419 1 nupG Purine nucleoside transport protein NupG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15195
Feature type CDS
Gene -
Product NupC/NupG family nucleoside CNT transporter
Location 18475 - 19737 (strand: 1)
Length 1263 (nucleotides) / 420 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_24
Orthogroup size 18
N. genomes 7

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Genomic region

Domains

PF01773 Na+ dependent nucleoside transporter N-terminus
PF07662 Na+ dependent nucleoside transporter C-terminus
PF07670 Nucleoside recognition

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1972 Nucleotide transport and metabolism (F) F Nucleoside permease NupC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03317 concentrative nucleoside transporter, CNT family - -

Protein Sequence

MSLVGMAALIFIAVLFSSDRRAIKLRTVVGAFIIQVLIGALVLYVPMGRKILLGMSDGVASVIGYGQKGMDFIFGGLVSPKMFEVFGGGGFVFALRVLPVIVFFSSLIAVLYYLGIMQLVIKVLGGGLQKILGTSRTESMSATANIFVGQTEAPLVVRPYIAGMTNSELFAVMCGGLASVAGSVLAGYAQMGVPLEYLIAASFMAAPGGLLFAKLIVPETEGYDDKAEAILESEEERPANIIDAAASGASAGMQLALNVGAMLLAFIALIALLNGILSGVGGWFDYPQLSLELILGWLFSPIAFLIGVPWSEAMTAGSFIGQKVVVNEFVAFMNFGEYMKPDAQVIAAGLQPLSDHTKAIISFALCGFANLSSVAILLGGLGGMAPTRRKDVARLGMKAVMAGTLSNLMSATIAGFFLAL

Flanking regions ( +/- flanking 50bp)

GGCTATTAATCTACACTATCGTGAACAGGGATACTTCCATGCAACTCCTCATGAGTCTGGTCGGGATGGCAGCGCTGATTTTTATCGCAGTACTGTTTTCCAGTGATCGCCGGGCAATTAAACTCCGTACTGTCGTTGGTGCATTTATTATTCAGGTGCTGATCGGGGCATTAGTCCTTTATGTTCCGATGGGCCGGAAAATTCTTCTCGGCATGTCTGACGGTGTTGCCAGTGTTATCGGCTACGGGCAGAAAGGGATGGATTTCATTTTCGGTGGTCTGGTTTCACCTAAAATGTTTGAGGTGTTCGGTGGTGGCGGGTTTGTTTTCGCACTGCGTGTTCTGCCGGTTATTGTCTTCTTCTCTTCTCTGATCGCGGTGTTGTACTACCTCGGTATCATGCAGCTTGTTATTAAAGTTCTCGGTGGCGGCTTACAGAAAATTCTGGGCACTTCCCGGACTGAATCCATGTCTGCAACAGCCAATATCTTTGTCGGACAGACAGAAGCGCCGCTGGTGGTTCGTCCGTATATTGCCGGTATGACCAACTCTGAACTGTTTGCGGTAATGTGTGGTGGTCTGGCATCCGTCGCCGGTTCTGTTCTGGCAGGTTACGCACAGATGGGCGTACCGCTTGAGTATCTGATTGCCGCTTCCTTTATGGCAGCTCCCGGCGGATTATTATTTGCCAAGCTGATAGTGCCGGAAACGGAAGGATACGACGACAAAGCGGAAGCTATTCTGGAATCTGAAGAAGAGCGCCCTGCAAATATCATTGATGCAGCGGCAAGTGGTGCATCTGCCGGTATGCAGTTAGCCCTGAACGTGGGTGCGATGTTGCTGGCCTTTATTGCCCTGATTGCGTTACTGAACGGGATCCTCAGTGGTGTCGGCGGCTGGTTTGACTATCCGCAACTGTCACTGGAGTTAATCCTGGGCTGGTTGTTCTCGCCAATCGCATTCCTCATCGGTGTGCCGTGGAGCGAAGCAATGACCGCCGGTTCCTTCATCGGTCAGAAAGTGGTGGTGAATGAGTTCGTTGCCTTTATGAACTTCGGTGAATATATGAAGCCGGATGCACAGGTGATCGCCGCAGGTCTGCAACCATTGTCAGATCACACCAAAGCAATTATCTCCTTTGCCTTGTGTGGTTTCGCAAACCTTTCTTCCGTGGCTATCCTGCTGGGTGGTCTGGGCGGTATGGCGCCGACGCGCCGTAAAGATGTGGCCCGTTTAGGTATGAAAGCCGTGATGGCAGGGACACTCTCTAACCTAATGAGTGCAACCATTGCCGGTTTCTTCCTCGCGCTGTAATTGATTTATCCGCACAGGTGATGTTTATTCACCTGTGCTTTATACCCTTA