Homologs in group_1624

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10705 FBDBKF_10705 81.9 Morganella morganii S1 gntX DNA utilization protein GntX
EHELCC_15040 EHELCC_15040 81.9 Morganella morganii S2 gntX DNA utilization protein GntX
NLDBIP_14870 NLDBIP_14870 81.9 Morganella morganii S4 gntX DNA utilization protein GntX
LHKJJB_14475 LHKJJB_14475 81.9 Morganella morganii S3 gntX DNA utilization protein GntX
HKOGLL_13095 HKOGLL_13095 81.9 Morganella morganii S5 gntX DNA utilization protein GntX
PMI_RS14460 PMI_RS14460 46.7 Proteus mirabilis HI4320 - DNA utilization protein GntX

Distribution of the homologs in the orthogroup group_1624

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1624

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZLI8 1.84e-66 207 48 0 227 3 gntX DNA utilization protein YhgH Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z222 7.17e-66 206 48 0 227 3 gntX DNA utilization protein YhgH Salmonella typhi
Q83J92 1.1e-64 203 47 0 227 3 gntX DNA utilization protein YhgH Shigella flexneri
Q8FCT3 1.84e-64 202 47 0 227 3 gntX DNA utilization protein YhgH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X715 2.29e-64 202 47 0 227 3 gntX DNA utilization protein YhgH Escherichia coli O157:H7
P46846 6.58e-64 201 47 0 227 3 gntX DNA utilization protein YhgH Escherichia coli (strain K12)
P31773 6.26e-48 160 36 2 222 3 comF Competence protein F Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39147 0.000153 45 25 4 163 3 comFC ComF operon protein 3 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14420
Feature type CDS
Gene -
Product phosphoribosyltransferase family protein
Location 111671 - 112354 (strand: -1)
Length 684 (nucleotides) / 227 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1624
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1040 General function prediction only (R) R DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02242 competence protein ComFC - -

Protein Sequence

MVIIENYCLLCKQPLAIAAHGICGFCERTLPVMPRVCLRCGRQLITPEPECGRCLHSPPPWQRLLAVTGYQPPLTTLVHRLKYGKQPFVARALARLLLCRFLQGYRDGDYLKPDLLLSSPLHRYKQWLRGFNQSDLITRPLAKWLRCPYDSSGVIRTRATLSQRTLSRAHRLTNLKSAFALTREIRGLHIAVTDDVITTGATMTALSELLIRAGAATVQVWCLCRTL

Flanking regions ( +/- flanking 50bp)

AAAAGAGTCGCCATCGCTATTGTGTCCTTATTTATCCGGAGGGAAGACGGATGGTTATTATTGAGAATTACTGCCTGCTATGCAAACAGCCTCTTGCTATCGCCGCACACGGGATCTGCGGATTCTGTGAACGGACACTGCCGGTGATGCCGCGCGTTTGTCTGCGCTGCGGGCGTCAGCTGATAACACCGGAGCCGGAGTGCGGGCGCTGTCTGCATTCGCCGCCACCCTGGCAGCGCCTGCTGGCAGTGACCGGATATCAGCCGCCGCTGACCACACTGGTTCACCGGCTCAAATACGGCAAGCAGCCTTTTGTCGCCCGCGCGCTCGCCCGTTTGCTGTTATGCCGGTTTTTACAGGGCTACCGCGACGGGGATTACCTGAAACCGGATTTACTGCTCAGTTCTCCGCTGCACCGGTACAAACAGTGGCTGCGCGGCTTTAATCAGAGCGACCTTATCACCCGTCCGCTGGCAAAATGGCTGCGCTGCCCTTATGACAGTTCCGGCGTTATCCGGACTCGTGCTACACTGAGTCAGCGGACGCTGTCCCGTGCTCATCGCCTGACAAACCTGAAATCTGCATTTGCCTTAACCCGTGAAATACGCGGACTGCATATCGCCGTAACAGATGATGTCATCACCACGGGAGCGACCATGACAGCGCTGTCTGAATTGCTCATTCGTGCGGGTGCTGCGACAGTCCAGGTCTGGTGTCTCTGTCGCACCTTGTAGTGAACACATGAATGGGCGTATTATAACCTACCAGAACAGTCAACTATTTT