COG1040


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1040, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain
Function(s) descr. General function prediction only (R)

Occurence in the database

COG1040 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1624 FBDBKF_10705 108315 108998 -1 gntX DNA utilization protein GntX Morganella morganii S1
1 group_1624 EHELCC_15040 108305 108988 -1 gntX DNA utilization protein GntX Morganella morganii S2
2 group_1624 NLDBIP_14870 108305 108988 -1 gntX DNA utilization protein GntX Morganella morganii S4
3 group_1624 LHKJJB_14475 32738 33421 1 gntX DNA utilization protein GntX Morganella morganii S3
4 group_1624 HKOGLL_13095 32738 33421 1 gntX DNA utilization protein GntX Morganella morganii S5
5 group_1624 F4V73_RS14420 111671 112354 -1 phosphoribosyltransferase family protein Morganella psychrotolerans
6 group_1624 PMI_RS14460 3207894 3208586 1 DNA utilization protein GntX Proteus mirabilis HI4320