Homologs in group_1582

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10325 FBDBKF_10325 94.2 Morganella morganii S1 gdhA NADP-specific glutamate dehydrogenase
EHELCC_14660 EHELCC_14660 94.2 Morganella morganii S2 gdhA NADP-specific glutamate dehydrogenase
NLDBIP_14490 NLDBIP_14490 94.2 Morganella morganii S4 gdhA NADP-specific glutamate dehydrogenase
LHKJJB_14855 LHKJJB_14855 94.2 Morganella morganii S3 gdhA NADP-specific glutamate dehydrogenase
HKOGLL_13475 HKOGLL_13475 94.2 Morganella morganii S5 gdhA NADP-specific glutamate dehydrogenase
PMI_RS14875 PMI_RS14875 83.2 Proteus mirabilis HI4320 gdhA NADP-specific glutamate dehydrogenase

Distribution of the homologs in the orthogroup group_1582

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1582

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15111 0.0 767 81 1 447 3 gdhA NADP-specific glutamate dehydrogenase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z6F6 0.0 765 81 1 447 3 gdhA NADP-specific glutamate dehydrogenase Salmonella typhi
P00370 0.0 763 81 1 447 1 gdhA NADP-specific glutamate dehydrogenase Escherichia coli (strain K12)
P14657 0.0 748 80 2 447 3 gdhA NADP-specific glutamate dehydrogenase Unknown prokaryotic organism
P43793 0.0 689 75 2 448 3 gdhA NADP-specific glutamate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P95544 0.0 555 61 2 437 1 gdhA NAD(P)-specific glutamate dehydrogenase Xylanibacter ruminicola
P94598 0.0 547 60 2 438 3 gdhA Glutamate dehydrogenase Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
P94316 0.0 516 56 3 445 2 gdhB NAD-specific glutamate dehydrogenase Bacteroides fragilis (strain YCH46)
P55990 3.79e-180 513 57 4 451 3 gdhA NADP-specific glutamate dehydrogenase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKD8 6.01e-178 508 57 4 448 3 gdhA NADP-specific glutamate dehydrogenase Helicobacter pylori (strain J99 / ATCC 700824)
P0C934 1.24e-176 504 54 3 444 1 gdh NAD-specific glutamate dehydrogenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
B2RKJ1 1.24e-176 504 54 3 444 3 gdh NAD-specific glutamate dehydrogenase Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)
P28724 3.07e-173 496 56 6 450 2 None NADP-specific glutamate dehydrogenase Giardia intestinalis
Q8RQP4 5.52e-170 487 57 5 446 3 gdh NADP-specific glutamate dehydrogenase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q9S1F9 1.54e-167 481 54 2 447 1 gdhA NADP-specific glutamate dehydrogenase Psychrobacter sp. (strain TAD1)
P31026 2.25e-166 478 56 4 443 1 gdh NADP-specific glutamate dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P28998 6.33e-164 475 54 6 445 2 None NADP-specific glutamate dehydrogenase (Fragment) Chlorella sorokiniana
P24295 1.49e-163 471 52 7 453 1 gdh NAD-specific glutamate dehydrogenase Clostridium symbiosum
Q96UJ9 4.37e-153 444 52 7 446 2 None NADP-specific glutamate dehydrogenase Hebeloma cylindrosporum
P54387 2.02e-149 436 50 6 453 3 gdhA NADP-specific glutamate dehydrogenase Agaricus bisporus
P54388 5.47e-149 434 51 6 446 2 GDHA NADP-specific glutamate dehydrogenase Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686)
O93934 4.75e-147 429 52 8 445 3 gdhA NADP-specific glutamate dehydrogenase Botryotinia fuckeliana
P18819 1.28e-145 426 53 11 458 3 gdhA NADP-specific glutamate dehydrogenase Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Q96VJ7 1.43e-144 423 52 7 446 3 GDH2 NADP-specific glutamate dehydrogenase Gibberella fujikuroi
P00369 1.5e-143 421 53 8 446 1 gdh NADP-specific glutamate dehydrogenase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9HGU4 2.92e-143 420 53 8 446 2 GDH NADP-specific glutamate dehydrogenase Neurospora intermedia
Q9URS1 3.09e-143 420 52 8 455 3 GDH NADP-specific glutamate dehydrogenase Penicillium chrysogenum
Q9HGU3 3.37e-142 417 52 8 446 2 GDH NADP-specific glutamate dehydrogenase Neurospora sitophila
P39708 7.56e-142 416 51 8 454 3 GDH3 NADP-specific glutamate dehydrogenase 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P07262 1.42e-140 413 49 7 452 1 GDH1 NADP-specific glutamate dehydrogenase 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8TFF6 1.1e-139 410 50 8 454 3 GDH1 NADP-specific glutamate dehydrogenase 1 Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / NBRC 10550 / MCYC 623 / NCYC 2669 / NRRL Y-11845)
P29507 2.65e-136 402 50 11 454 3 GDHA NADP-specific glutamate dehydrogenase Schwanniomyces occidentalis
Q9HFR6 4.7e-131 389 49 9 458 3 GDH NADP-specific glutamate dehydrogenase Tuber borchii
P78804 2.24e-126 377 48 8 447 1 gdh1 NADP-specific glutamate dehydrogenase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5MBG2 1.71e-55 192 32 5 416 1 gdhA1 NADP-specific glutamate dehydrogenase A1 Halobacterium salinarum
Q9HRM7 1.71e-55 192 32 5 416 3 gdhA1 NADP-specific glutamate dehydrogenase A1 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
A3MWK6 2.42e-50 179 31 6 394 1 Pcal_1606 NADP(+)-dependent glutamate dehydrogenase Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)
Q7A1B9 9.18e-50 177 30 6 399 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MW2)
Q6GAW8 9.18e-50 177 30 6 399 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MSSA476)
Q6GID0 9.18e-50 177 30 6 399 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MRSA252)
Q7A6H8 9.18e-50 177 30 6 399 1 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain N315)
Q99VD0 9.18e-50 177 30 6 399 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HHC7 9.18e-50 177 30 6 399 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain COL)
P96110 9.6e-50 177 32 6 401 1 gdhA Glutamate dehydrogenase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P80053 1.8e-49 177 29 5 402 1 gdhA-2 Glutamate dehydrogenase 2 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
P80319 2.96e-48 173 31 9 407 1 gdhA Glutamate dehydrogenase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O04937 1.02e-47 172 30 6 389 2 GDHA Glutamate dehydrogenase A Nicotiana plumbaginifolia
O74024 2.97e-47 171 30 8 411 1 gdhA Glutamate dehydrogenase Thermococcus profundus
P39633 3.66e-47 171 30 5 390 1 rocG Catabolic NAD-specific glutamate dehydrogenase RocG Bacillus subtilis (strain 168)
P0CL72 4.89e-47 170 30 9 407 3 gdhA Glutamate dehydrogenase Pyrococcus horikoshii
P0CL73 4.89e-47 170 30 9 407 3 gdhA Glutamate dehydrogenase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q56304 6.6e-47 170 30 9 414 1 gdhA Glutamate dehydrogenase Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
Q33E23 6.98e-47 169 31 5 399 2 GDH2 Glutamate dehydrogenase 2, mitochondrial Oryza sativa subsp. japonica
A2XW22 6.98e-47 169 31 5 399 3 GDH2 Glutamate dehydrogenase 2, mitochondrial Oryza sativa subsp. indica
Q47950 8.38e-47 169 30 9 407 3 gdhA Glutamate dehydrogenase Pyrococcus abyssi (strain GE5 / Orsay)
F2Z610 1.45e-46 169 32 5 361 3 gdhA2 Glutamate dehydrogenase A2 Halobacterium salinarum
Q9HQE1 1.45e-46 169 32 5 361 3 gdhA2 Glutamate dehydrogenase A2 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P52596 1.85e-46 168 30 6 395 2 GDH Glutamate dehydrogenase Vitis vinifera
Q47951 2.49e-46 168 30 9 407 1 gdhA Glutamate dehydrogenase Pyrococcus endeavori
P39475 3.13e-46 168 30 7 425 3 gdhA NADP-specific glutamate dehydrogenase Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)
Q43314 2.65e-45 165 29 6 407 1 GDH1 Glutamate dehydrogenase 1 Arabidopsis thaliana
Q6H3Y7 3.07e-45 165 29 5 402 2 GDH3 Glutamate dehydrogenase 3, mitochondrial Oryza sativa subsp. japonica
A3MUY9 3.48e-45 165 30 9 398 1 Pcal_1031 NAD(+)-dependent glutamate dehydrogenase Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)
P29051 4.87e-45 165 30 4 400 1 gdhX NAD-specific glutamate dehydrogenase A Halobacterium salinarum
Q38946 1.05e-44 164 29 5 399 1 GDH2 Glutamate dehydrogenase 2 Arabidopsis thaliana
Q9S7A0 2.19e-44 163 30 7 405 3 GSH3 Probable glutamate dehydrogenase 3 Arabidopsis thaliana
P54386 4.35e-44 162 29 5 399 3 gdhA NADP-specific glutamate dehydrogenase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P93541 9.28e-44 161 28 5 403 2 GDH1 Glutamate dehydrogenase Solanum lycopersicum
Q9LEC8 2.89e-43 160 29 5 388 2 GDHB Glutamate dehydrogenase B Nicotiana plumbaginifolia
Q9YC65 1.51e-42 158 32 7 372 3 gdhA Glutamate dehydrogenase Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
P0DMG3 3.65e-42 157 30 4 397 3 gdhB Glutamate dehydrogenase B Halobacterium salinarum
P0DMG4 3.65e-42 157 30 4 397 3 gdhB Glutamate dehydrogenase B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P28997 3.3e-41 154 31 5 368 1 None NAD-specific glutamate dehydrogenase Peptoniphilus asaccharolyticus
Q852M0 3.77e-41 154 29 6 403 2 GDH1 Glutamate dehydrogenase 1, mitochondrial Oryza sativa subsp. japonica
A2XMV1 3.77e-41 154 29 6 403 3 GDH1 Glutamate dehydrogenase 1, mitochondrial Oryza sativa subsp. indica
P50735 4.27e-41 154 28 6 395 1 gudB Cryptic catabolic NAD-specific glutamate dehydrogenase GudB Bacillus subtilis (strain 168)
P27346 4.73e-41 154 31 8 399 3 gluD NAD-specific glutamate dehydrogenase Clostridioides difficile
Q43260 1.32e-40 152 29 6 410 1 GDH1 Glutamate dehydrogenase Zea mays
O59650 7.39e-40 151 29 10 413 1 gdhA Glutamate dehydrogenase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P00366 6.07e-34 137 29 10 375 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Bos taurus
P49448 8.97e-34 136 29 8 357 1 GLUD2 Glutamate dehydrogenase 2, mitochondrial Homo sapiens
Q64HZ8 2.62e-33 135 29 11 381 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Pan troglodytes
Q64HZ9 7.78e-33 134 29 10 375 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Hylobates lar
P10860 1.54e-32 133 29 12 386 1 Glud1 Glutamate dehydrogenase 1, mitochondrial Rattus norvegicus
P26443 1.64e-32 132 29 11 375 1 Glud1 Glutamate dehydrogenase 1, mitochondrial Mus musculus
Q64I00 1.91e-32 132 29 10 375 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Pongo pygmaeus
Q64I01 2.03e-32 132 29 10 375 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Gorilla gorilla gorilla
P42174 2.05e-32 132 28 10 375 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Sus scrofa
P00368 2.35e-32 131 28 12 381 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial (Fragment) Gallus gallus
P00367 2.66e-32 132 29 10 375 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Homo sapiens
Q54KB7 2.06e-31 129 26 15 459 1 gluD Glutamate dehydrogenase, mitochondrial Dictyostelium discoideum
P82264 7.73e-30 124 29 11 381 1 glud1 Glutamate dehydrogenase, mitochondrial Chaenocephalus aceratus
P54385 1.06e-28 122 30 11 359 1 Gdh Glutamate dehydrogenase, mitochondrial Drosophila melanogaster
Q53199 1.94e-18 90 26 13 358 3 NGR_a01340 Probable glutamate dehydrogenase Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q59771 5.02e-07 55 24 12 334 1 pdh Phenylalanine dehydrogenase Rhodococcus sp.
P13154 2e-06 53 27 14 326 1 ldh Leucine dehydrogenase Geobacillus stearothermophilus
O69056 1.33e-05 50 27 14 305 1 vdh Valine dehydrogenase Streptomyces albus (strain ATCC 21838 / DSM 41398 / FERM P-419 / JCM 4703 / NBRC 107858)
Q06539 6.91e-05 48 26 13 318 1 vdh Valine dehydrogenase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q60030 0.000127 47 26 12 323 1 ldh Leucine dehydrogenase Thermoactinomyces intermedius
P0A392 0.000159 47 27 14 311 3 ldh Leucine dehydrogenase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P0A393 0.000159 47 27 14 311 1 ldh Leucine dehydrogenase Bacillus cereus
Q53560 0.000238 47 26 14 334 1 ldh Leucine dehydrogenase Bacillus licheniformis
W8CV45 0.00064 45 22 11 328 1 nptrpdh L-tryptophan dehydrogenase Nostoc punctiforme

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14025
Feature type CDS
Gene gdhA
Product NADP-specific glutamate dehydrogenase
Location 14881 - 16221 (strand: -1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1582
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0334 Amino acid transport and metabolism (E) E Glutamate dehydrogenase/leucine dehydrogenase

Kegg Ortholog Annotation(s)

Protein Sequence

MSNFISLETFLESVQRRDPSQPEFLQAVREVFSTLWPFLGNNPQYRDQNLLARLVEPERVIQFRVTWVDDQNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTLKNALTTLPMGGGKGGSDFDPKGKSQSEVMRFCQALMTELYRHLGPDTDVPAGDIGVGGREVGYMAGMMKKLSNNTSCVFTGKGLSFGGSLIRPEATGYGLVYFTQAMLERHGMSFEGMQVSVSGSGNVALFTIEKCLSLGAKVITASDSGGTVVDKDGFTTEKLARLTEIKNRYGRVEEYAKEFGLVYLKDQTPWAVPVDIALPCATQNELDLADAQVLIKNGVKAVAEGANMPTTIPATDAFLAANVLFAPGKAANAGGVATSGLEMSQNSVRMSWKTEEVDARLHHIMLDIHNACVQYGSEEKQTNYVQGANIAGFVKVADAMLAQGVL

Flanking regions ( +/- flanking 50bp)

GTATATTTTGCGCATGAATGCATAAGGGTAAGACAGACAGGAAAATAAATATGAGTAACTTTATCTCTTTGGAAACGTTTCTGGAAAGTGTTCAGCGTCGTGATCCGTCACAACCTGAATTCCTCCAGGCAGTACGTGAAGTGTTCTCCACACTATGGCCATTCCTTGGCAATAACCCGCAATACCGCGATCAAAATCTGCTCGCGCGCCTTGTTGAACCGGAGCGTGTTATTCAGTTTCGTGTCACCTGGGTGGATGATCAGAATCAGGTACAGGTTAACCGTGCGTGGCGCGTACAGTTCAGCTCCGCTATCGGCCCGTACAAAGGCGGTATGCGCTTTCATCCGTCAGTAAACCTCTCAATCCTCAAGTTCCTGGGCTTTGAGCAGACACTGAAAAACGCACTGACCACACTGCCGATGGGCGGCGGGAAAGGCGGTTCTGATTTTGATCCGAAAGGAAAAAGCCAGAGCGAAGTTATGCGCTTCTGCCAGGCACTGATGACCGAACTGTACCGTCATCTGGGTCCGGATACGGATGTTCCTGCGGGTGATATCGGCGTGGGTGGTCGTGAAGTCGGCTACATGGCGGGCATGATGAAAAAACTCTCCAACAACACATCTTGTGTATTCACCGGTAAAGGGCTCTCTTTCGGCGGCAGTCTGATCCGTCCGGAAGCCACAGGTTACGGACTGGTTTACTTCACACAAGCCATGCTGGAGCGCCACGGAATGAGTTTTGAGGGTATGCAGGTTTCTGTTTCCGGCTCCGGTAACGTAGCGCTGTTTACTATCGAAAAATGCCTGTCACTTGGTGCAAAAGTTATTACCGCATCAGACTCCGGTGGTACTGTTGTCGATAAAGACGGTTTCACCACAGAGAAACTCGCTCGTCTGACAGAAATTAAAAACCGTTACGGTCGTGTGGAAGAGTATGCGAAAGAGTTCGGGCTGGTTTATCTGAAAGATCAGACACCGTGGGCGGTTCCGGTTGATATCGCGCTGCCGTGTGCCACTCAGAATGAGTTGGATCTGGCGGATGCACAGGTGCTTATCAAAAACGGCGTGAAAGCAGTTGCAGAAGGTGCCAATATGCCGACAACTATTCCGGCAACAGATGCATTCCTGGCGGCCAATGTGCTGTTTGCACCGGGCAAAGCCGCAAACGCAGGTGGTGTGGCAACATCTGGTCTGGAAATGTCACAAAACTCAGTGCGTATGAGCTGGAAAACAGAAGAAGTGGATGCGCGTCTGCATCACATCATGCTGGATATCCACAACGCCTGTGTGCAGTACGGCAGCGAAGAGAAACAGACTAATTATGTACAGGGTGCGAATATTGCCGGGTTTGTGAAAGTGGCTGACGCAATGCTGGCACAAGGCGTTCTGTAAGTTTTAATTCGTTGCAGCAGTAAGTGTCTGTCGTGTCAGTTACGCGGTAA