Homologs in group_1582

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10325 FBDBKF_10325 83.0 Morganella morganii S1 gdhA NADP-specific glutamate dehydrogenase
EHELCC_14660 EHELCC_14660 83.0 Morganella morganii S2 gdhA NADP-specific glutamate dehydrogenase
NLDBIP_14490 NLDBIP_14490 83.0 Morganella morganii S4 gdhA NADP-specific glutamate dehydrogenase
LHKJJB_14855 LHKJJB_14855 83.0 Morganella morganii S3 gdhA NADP-specific glutamate dehydrogenase
HKOGLL_13475 HKOGLL_13475 83.0 Morganella morganii S5 gdhA NADP-specific glutamate dehydrogenase
F4V73_RS14025 F4V73_RS14025 83.2 Morganella psychrotolerans gdhA NADP-specific glutamate dehydrogenase

Distribution of the homologs in the orthogroup group_1582

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1582

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15111 0.0 788 84 1 447 3 gdhA NADP-specific glutamate dehydrogenase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z6F6 0.0 788 84 1 447 3 gdhA NADP-specific glutamate dehydrogenase Salmonella typhi
P00370 0.0 777 82 1 447 1 gdhA NADP-specific glutamate dehydrogenase Escherichia coli (strain K12)
P14657 0.0 767 81 2 447 3 gdhA NADP-specific glutamate dehydrogenase Unknown prokaryotic organism
P43793 0.0 682 73 3 448 3 gdhA NADP-specific glutamate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P94598 0.0 551 60 2 441 3 gdhA Glutamate dehydrogenase Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
P95544 0.0 547 61 3 439 1 gdhA NAD(P)-specific glutamate dehydrogenase Xylanibacter ruminicola
P94316 0.0 515 58 3 444 2 gdhB NAD-specific glutamate dehydrogenase Bacteroides fragilis (strain YCH46)
Q8RQP4 3.23e-176 503 58 4 449 3 gdh NADP-specific glutamate dehydrogenase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
P55990 7.25e-176 502 57 4 448 3 gdhA NADP-specific glutamate dehydrogenase Helicobacter pylori (strain ATCC 700392 / 26695)
P28724 3.07e-174 498 55 5 447 2 None NADP-specific glutamate dehydrogenase Giardia intestinalis
Q9ZKD8 3.9e-174 498 57 4 448 3 gdhA NADP-specific glutamate dehydrogenase Helicobacter pylori (strain J99 / ATCC 700824)
P0C934 1.19e-172 494 55 3 435 1 gdh NAD-specific glutamate dehydrogenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
B2RKJ1 1.19e-172 494 55 3 435 3 gdh NAD-specific glutamate dehydrogenase Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)
P31026 4.44e-170 488 56 4 449 1 gdh NADP-specific glutamate dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P24295 5.67e-169 485 54 5 447 1 gdh NAD-specific glutamate dehydrogenase Clostridium symbiosum
P28998 3e-165 478 54 4 448 2 None NADP-specific glutamate dehydrogenase (Fragment) Chlorella sorokiniana
Q9S1F9 1.51e-160 463 52 1 446 1 gdhA NADP-specific glutamate dehydrogenase Psychrobacter sp. (strain TAD1)
Q96UJ9 1.97e-156 453 52 6 444 2 None NADP-specific glutamate dehydrogenase Hebeloma cylindrosporum
P54387 1.54e-154 448 51 7 452 3 gdhA NADP-specific glutamate dehydrogenase Agaricus bisporus
P54388 4.2e-154 447 53 6 444 2 GDHA NADP-specific glutamate dehydrogenase Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686)
O93934 4.75e-152 442 53 7 443 3 gdhA NADP-specific glutamate dehydrogenase Botryotinia fuckeliana
Q9URS1 1.46e-151 441 53 9 457 3 GDH NADP-specific glutamate dehydrogenase Penicillium chrysogenum
P18819 8.33e-149 434 53 10 457 3 gdhA NADP-specific glutamate dehydrogenase Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Q8TFF6 1.78e-148 433 52 9 451 3 GDH1 NADP-specific glutamate dehydrogenase 1 Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / NBRC 10550 / MCYC 623 / NCYC 2669 / NRRL Y-11845)
P00369 2.47e-148 432 54 7 444 1 gdh NADP-specific glutamate dehydrogenase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9HGU4 2.78e-148 432 54 7 444 2 GDH NADP-specific glutamate dehydrogenase Neurospora intermedia
P07262 3.02e-147 430 51 8 451 1 GDH1 NADP-specific glutamate dehydrogenase 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9HGU3 6.19e-147 429 53 7 444 2 GDH NADP-specific glutamate dehydrogenase Neurospora sitophila
Q96VJ7 1.21e-146 428 53 8 445 3 GDH2 NADP-specific glutamate dehydrogenase Gibberella fujikuroi
P39708 2.07e-144 423 51 8 453 3 GDH3 NADP-specific glutamate dehydrogenase 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P29507 3.07e-138 407 50 11 453 3 GDHA NADP-specific glutamate dehydrogenase Schwanniomyces occidentalis
Q9HFR6 3.79e-137 404 51 10 455 3 GDH NADP-specific glutamate dehydrogenase Tuber borchii
P78804 1.99e-127 379 48 8 446 1 gdh1 NADP-specific glutamate dehydrogenase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5MBG2 2.25e-58 200 32 5 420 1 gdhA1 NADP-specific glutamate dehydrogenase A1 Halobacterium salinarum
Q9HRM7 2.25e-58 200 32 5 420 3 gdhA1 NADP-specific glutamate dehydrogenase A1 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
A3MWK6 3.83e-53 186 35 5 362 1 Pcal_1606 NADP(+)-dependent glutamate dehydrogenase Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)
P80053 8.82e-53 185 31 6 403 1 gdhA-2 Glutamate dehydrogenase 2 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
F2Z610 1.15e-52 185 34 5 361 3 gdhA2 Glutamate dehydrogenase A2 Halobacterium salinarum
Q9HQE1 1.15e-52 185 34 5 361 3 gdhA2 Glutamate dehydrogenase A2 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P96110 5.29e-52 183 34 5 361 1 gdhA Glutamate dehydrogenase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
O74024 7.52e-52 183 33 8 415 1 gdhA Glutamate dehydrogenase Thermococcus profundus
O04937 1.44e-51 182 31 5 400 2 GDHA Glutamate dehydrogenase A Nicotiana plumbaginifolia
P80319 1.53e-51 182 32 9 414 1 gdhA Glutamate dehydrogenase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P52596 4.15e-51 181 31 3 364 2 GDH Glutamate dehydrogenase Vitis vinifera
Q7A1B9 5.1e-51 181 30 6 401 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MW2)
Q6GAW8 5.1e-51 181 30 6 401 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MSSA476)
Q6GID0 5.1e-51 181 30 6 401 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain MRSA252)
Q7A6H8 5.1e-51 181 30 6 401 1 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain N315)
Q99VD0 5.1e-51 181 30 6 401 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HHC7 5.1e-51 181 30 6 401 3 gluD NAD-specific glutamate dehydrogenase Staphylococcus aureus (strain COL)
Q56304 1.06e-50 180 32 8 413 1 gdhA Glutamate dehydrogenase Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
A3MUY9 3.76e-50 179 34 6 358 1 Pcal_1031 NAD(+)-dependent glutamate dehydrogenase Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)
P54386 6.91e-50 178 32 6 400 3 gdhA NADP-specific glutamate dehydrogenase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6H3Y7 7.89e-50 177 30 6 403 2 GDH3 Glutamate dehydrogenase 3, mitochondrial Oryza sativa subsp. japonica
Q9LEC8 9.43e-50 177 30 5 388 2 GDHB Glutamate dehydrogenase B Nicotiana plumbaginifolia
P39475 1.58e-49 177 33 5 340 3 gdhA NADP-specific glutamate dehydrogenase Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)
Q38946 3.03e-49 176 31 5 398 1 GDH2 Glutamate dehydrogenase 2 Arabidopsis thaliana
Q33E23 3.09e-49 176 30 5 402 2 GDH2 Glutamate dehydrogenase 2, mitochondrial Oryza sativa subsp. japonica
A2XW22 3.09e-49 176 30 5 402 3 GDH2 Glutamate dehydrogenase 2, mitochondrial Oryza sativa subsp. indica
Q47950 4.8e-49 176 31 9 414 3 gdhA Glutamate dehydrogenase Pyrococcus abyssi (strain GE5 / Orsay)
P93541 9.35e-49 174 30 5 396 2 GDH1 Glutamate dehydrogenase Solanum lycopersicum
P0CL72 1.24e-48 174 31 9 414 3 gdhA Glutamate dehydrogenase Pyrococcus horikoshii
P0CL73 1.24e-48 174 31 9 414 3 gdhA Glutamate dehydrogenase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q47951 1.36e-48 174 31 9 414 1 gdhA Glutamate dehydrogenase Pyrococcus endeavori
Q9S7A0 2.1e-48 174 31 7 405 3 GSH3 Probable glutamate dehydrogenase 3 Arabidopsis thaliana
Q43314 2.19e-48 173 30 6 407 1 GDH1 Glutamate dehydrogenase 1 Arabidopsis thaliana
P39633 1.03e-47 172 31 5 362 1 rocG Catabolic NAD-specific glutamate dehydrogenase RocG Bacillus subtilis (strain 168)
Q9YC65 2e-47 171 33 5 370 3 gdhA Glutamate dehydrogenase Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q852M0 2.63e-46 168 30 7 405 2 GDH1 Glutamate dehydrogenase 1, mitochondrial Oryza sativa subsp. japonica
A2XMV1 2.63e-46 168 30 7 405 3 GDH1 Glutamate dehydrogenase 1, mitochondrial Oryza sativa subsp. indica
P27346 1.42e-45 166 32 6 352 3 gluD NAD-specific glutamate dehydrogenase Clostridioides difficile
P29051 1.5e-45 166 30 5 403 1 gdhX NAD-specific glutamate dehydrogenase A Halobacterium salinarum
Q43260 3.07e-45 165 29 6 410 1 GDH1 Glutamate dehydrogenase Zea mays
P0DMG3 1.95e-44 163 30 4 397 3 gdhB Glutamate dehydrogenase B Halobacterium salinarum
P0DMG4 1.95e-44 163 30 4 397 3 gdhB Glutamate dehydrogenase B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P28997 2.8e-44 163 31 4 367 1 None NAD-specific glutamate dehydrogenase Peptoniphilus asaccharolyticus
P50735 8.17e-43 159 31 7 352 1 gudB Cryptic catabolic NAD-specific glutamate dehydrogenase GudB Bacillus subtilis (strain 168)
O59650 3.03e-42 157 31 10 416 1 gdhA Glutamate dehydrogenase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P00366 7.98e-34 136 30 13 389 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Bos taurus
P49448 1.56e-33 135 29 14 395 1 GLUD2 Glutamate dehydrogenase 2, mitochondrial Homo sapiens
Q64HZ9 5.99e-33 134 29 13 389 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Hylobates lar
Q64HZ8 6.09e-33 134 29 13 389 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Pan troglodytes
P00367 1.3e-32 133 29 13 389 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Homo sapiens
Q64I00 1.34e-32 133 30 13 389 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Pongo pygmaeus
Q64I01 2.15e-32 132 30 13 389 3 GLUD2 Glutamate dehydrogenase 2, mitochondrial Gorilla gorilla gorilla
P10860 2.6e-32 132 29 13 389 1 Glud1 Glutamate dehydrogenase 1, mitochondrial Rattus norvegicus
P26443 3.07e-32 132 29 13 389 1 Glud1 Glutamate dehydrogenase 1, mitochondrial Mus musculus
P42174 4.7e-32 131 29 13 389 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial Sus scrofa
P82264 6.83e-31 127 29 12 380 1 glud1 Glutamate dehydrogenase, mitochondrial Chaenocephalus aceratus
P00368 9.05e-31 127 29 13 382 1 GLUD1 Glutamate dehydrogenase 1, mitochondrial (Fragment) Gallus gallus
P54385 2.78e-30 126 31 12 366 1 Gdh Glutamate dehydrogenase, mitochondrial Drosophila melanogaster
Q54KB7 1.62e-28 120 27 12 388 1 gluD Glutamate dehydrogenase, mitochondrial Dictyostelium discoideum
Q53199 4.82e-19 92 26 11 358 3 NGR_a01340 Probable glutamate dehydrogenase Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P23307 3.37e-08 58 23 15 392 1 pdh Phenylalanine dehydrogenase Lysinibacillus sphaericus
B2IXH4 1.78e-07 56 23 10 329 1 Npun_R1275 L-tryptophan dehydrogenase Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
P54531 2.92e-07 55 24 11 333 3 yqiT Leucine dehydrogenase Bacillus subtilis (strain 168)
P0A392 3.42e-07 55 25 11 313 3 ldh Leucine dehydrogenase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P0A393 3.42e-07 55 25 11 313 1 ldh Leucine dehydrogenase Bacillus cereus
W8CV45 6.15e-07 54 23 10 329 1 nptrpdh L-tryptophan dehydrogenase Nostoc punctiforme
P13154 6.18e-07 55 26 11 325 1 ldh Leucine dehydrogenase Geobacillus stearothermophilus
Q53560 9.98e-07 54 25 13 334 1 ldh Leucine dehydrogenase Bacillus licheniformis
Q59771 2.9e-06 52 25 9 296 1 pdh Phenylalanine dehydrogenase Rhodococcus sp.
P97014 8.52e-06 51 21 14 383 3 pdh Phenylalanine dehydrogenase Sporosarcina ureae
Q60030 4.23e-05 49 25 12 325 1 ldh Leucine dehydrogenase Thermoactinomyces intermedius
Q59224 0.000112 47 24 15 378 1 pdh Phenylalanine dehydrogenase Bacillus badius
A0A0F5HSE8 0.000123 47 24 14 371 1 QY95_00856 Phenylalanine dehydrogenase Bacillus thermotolerans
Q0SG95 0.000354 46 24 13 330 1 RHA1_ro01628 Phenylalanine dehydrogenase Rhodococcus jostii (strain RHA1)
O69056 0.000878 45 24 11 304 1 vdh Valine dehydrogenase Streptomyces albus (strain ATCC 21838 / DSM 41398 / FERM P-419 / JCM 4703 / NBRC 107858)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14875
Feature type CDS
Gene gdhA
Product NADP-specific glutamate dehydrogenase
Location 3301726 - 3303066 (strand: -1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1582
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0334 Amino acid transport and metabolism (E) E Glutamate dehydrogenase/leucine dehydrogenase

Kegg Ortholog Annotation(s)

Protein Sequence

MNRSGSLSSFLEEVEKYNAHQPEYHQAVREVFTTLWPFLEKNPQYREQSLLERLVEPERIIQFRVCWLDDKGQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGAKGGSDFNPKGRSHAEVMRFCQALMTELYRHLGADTDVPAGDIGVGAREVGFMAGMMKKLSNSNECVFTGKGLSFGGSLIRPEATGYGLVYFTNAMLKRHGMSLEGMRVAVSGAGNVAQFTIEKCLELGAKVVTASDSGGTVVDEAGFTTEKLARLTEIKNNYGRIEEYAKEFGLTYLEGQQPWAVAVDIALPCATQNELDLDAAKVLIKNGVKAVAEGANMPTTIAATDAFIEAGVLFAPGKAANAGGVATSGLEMAQNAARLSWKAEKVDARLHHIMLDIHHACVNYGGEGKQTNYIQGANIAGFVKVADAMLAQGVL

Flanking regions ( +/- flanking 50bp)

GAATAAATGAGGTTATGCCAACATCACATTACATAAAAAGGAATAGCTGAATGAATAGATCTGGCTCATTATCTTCGTTTTTAGAAGAGGTAGAAAAATATAACGCTCATCAACCTGAATACCATCAGGCGGTACGTGAAGTTTTTACCACTCTGTGGCCTTTTTTAGAGAAAAATCCACAATATCGTGAACAATCATTACTTGAGCGCTTAGTTGAGCCTGAACGTATTATTCAGTTTCGCGTCTGTTGGTTAGATGATAAAGGACAAGTTCAAGTTAATCGCGCATGGCGAGTACAATTTAACTCTGCTATTGGTCCCTACAAAGGTGGAATGCGTTTTCATCCATCAGTAAACCTCTCTATTTTAAAATTTTTAGGTTTTGAACAAACCTTTAAAAATGCACTGACAACACTGCCGATGGGAGGCGCTAAAGGGGGATCTGATTTTAATCCCAAGGGGAGAAGCCACGCAGAGGTAATGCGTTTTTGTCAGGCGTTAATGACTGAGCTCTATCGTCATTTAGGGGCTGATACTGATGTCCCCGCGGGAGATATTGGTGTGGGGGCAAGGGAAGTTGGCTTTATGGCCGGAATGATGAAAAAGCTCTCGAATAGCAATGAATGTGTCTTTACGGGTAAAGGTTTATCATTTGGTGGCAGTTTGATCCGCCCAGAAGCCACAGGGTACGGTTTAGTCTATTTTACTAACGCAATGCTTAAACGTCACGGCATGTCCCTTGAGGGAATGCGTGTAGCCGTTTCTGGTGCTGGCAATGTGGCACAATTCACCATTGAAAAATGCCTTGAGCTGGGTGCGAAAGTGGTCACCGCTTCAGATTCTGGCGGAACCGTGGTGGATGAAGCTGGATTTACAACCGAAAAACTGGCTCGCTTAACTGAAATTAAAAATAATTATGGTCGTATTGAAGAGTACGCCAAAGAGTTTGGTTTAACTTATCTTGAAGGGCAACAGCCTTGGGCTGTCGCTGTTGATATTGCACTACCTTGTGCTACACAAAATGAATTAGATTTAGACGCCGCAAAAGTGTTAATTAAAAACGGTGTTAAAGCTGTTGCCGAAGGCGCAAATATGCCAACGACCATTGCGGCAACCGATGCTTTTATTGAGGCGGGAGTCTTGTTTGCACCGGGTAAAGCCGCTAACGCTGGAGGGGTAGCAACTTCGGGATTAGAAATGGCGCAAAACGCAGCACGCTTGAGTTGGAAAGCTGAGAAAGTTGATGCTCGCTTACATCATATTATGCTGGATATTCATCACGCTTGTGTAAACTATGGCGGTGAAGGTAAACAAACTAATTATATTCAAGGGGCCAATATTGCAGGTTTTGTTAAAGTTGCTGATGCAATGTTAGCGCAAGGCGTGCTGTAATTTTTTAAGTTAGTGCGAGTGCATAGCGCTCGCTCTGACCGTTTCAATCA