COG0334


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0334, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glutamate dehydrogenase/leucine dehydrogenase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0334 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1582 FBDBKF_10325 18912 20252 -1 gdhA NADP-specific glutamate dehydrogenase Morganella morganii S1
1 group_1582 EHELCC_14660 18902 20242 -1 gdhA NADP-specific glutamate dehydrogenase Morganella morganii S2
2 group_1582 NLDBIP_14490 18902 20242 -1 gdhA NADP-specific glutamate dehydrogenase Morganella morganii S4
3 group_1582 LHKJJB_14855 121484 122824 1 gdhA NADP-specific glutamate dehydrogenase Morganella morganii S3
4 group_1582 HKOGLL_13475 121484 122824 1 gdhA NADP-specific glutamate dehydrogenase Morganella morganii S5
5 group_1582 F4V73_RS14025 14881 16221 -1 gdhA NADP-specific glutamate dehydrogenase Morganella psychrotolerans
6 group_1582 PMI_RS14875 3301726 3303066 -1 gdhA NADP-specific glutamate dehydrogenase Proteus mirabilis HI4320