Homologs in group_2349

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18965 FBDBKF_18965 91.2 Morganella morganii S1 rpoS RNA polymerase sigma factor RpoS
EHELCC_18710 EHELCC_18710 91.2 Morganella morganii S2 rpoS RNA polymerase sigma factor RpoS
NLDBIP_18595 NLDBIP_18595 91.2 Morganella morganii S4 rpoS RNA polymerase sigma factor RpoS
LHKJJB_18580 LHKJJB_18580 91.2 Morganella morganii S3 rpoS RNA polymerase sigma factor RpoS
HKOGLL_18315 HKOGLL_18315 91.2 Morganella morganii S5 rpoS RNA polymerase sigma factor RpoS
PMI_RS11015 PMI_RS11015 79.4 Proteus mirabilis HI4320 rpoS RNA polymerase sigma factor RpoS

Distribution of the homologs in the orthogroup group_2349

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2349

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DM81 0.0 507 77 3 334 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 0.0 507 77 3 334 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 0.0 507 77 3 334 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 0.0 507 77 3 334 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 0.0 507 77 3 334 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
P35540 0.0 506 77 3 334 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P13445 1.57e-180 505 76 3 334 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
P47765 8.5e-180 503 77 4 334 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
O51804 2.47e-163 461 77 0 289 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45684 3.21e-145 416 73 0 276 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KI19 5.01e-115 340 59 0 271 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P52328 4.02e-79 249 46 0 262 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
P52329 1.6e-78 247 43 1 293 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
O66381 1.77e-77 244 44 1 285 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P0A0I9 2.07e-77 244 43 1 291 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 2.07e-77 244 43 1 291 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 2.07e-77 244 43 1 291 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 2.07e-77 244 43 1 291 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 2.07e-77 244 43 1 291 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 2.07e-77 244 43 1 291 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q99TT5 2.48e-77 244 43 1 291 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
Q8CP24 7.47e-77 243 43 0 284 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 7.47e-77 243 43 0 284 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P52331 1.06e-76 243 44 2 282 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92BQ6 1.22e-76 242 44 2 282 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P77994 1.8e-76 243 45 0 264 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P06224 1.5e-75 239 41 3 317 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
P0A4J0 4.2e-74 236 45 0 273 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 4.2e-74 236 45 0 273 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
O33662 1.38e-73 234 44 1 286 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P33656 2.51e-73 234 46 2 281 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P58290 3.99e-69 223 42 3 285 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
Q04506 5.63e-69 223 42 3 285 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P18182 1.48e-67 219 42 2 282 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P17531 5.38e-67 226 45 1 234 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
Q68VQ5 2.33e-66 223 46 1 226 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92FZ8 2.42e-66 223 46 1 226 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UJT1 2.68e-66 223 45 1 234 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q31QR8 2.78e-66 214 39 3 300 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P33451 2.97e-66 222 46 1 226 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
P27785 3.21e-66 214 42 1 282 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P52324 6.07e-66 222 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
D5AQI9 1.19e-65 221 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P0CZ15 1.75e-65 221 43 0 225 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
Q59753 1.9e-65 221 44 0 225 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
Q2K619 2.04e-65 221 44 0 225 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P33452 2.04e-65 221 44 0 225 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
P9WGI5 2.93e-65 211 40 1 286 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 2.93e-65 211 40 1 286 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P18183 5.22e-65 216 38 3 327 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q1RKH7 7.05e-65 219 44 1 226 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
P77951 7.28e-65 216 39 1 292 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 7.28e-65 216 39 1 292 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
P26683 7.53e-65 213 38 3 309 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q87DT7 5.8e-64 216 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PDM9 6.24e-64 216 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
Q03065 7.8e-64 208 40 3 299 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q31ME3 1.11e-63 207 37 3 309 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52322 1.63e-63 210 41 4 277 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
P18184 2.45e-63 207 40 2 285 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P33118 3.16e-63 206 40 2 288 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q8P4H2 4.08e-63 214 42 0 225 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q72L95 4.23e-63 209 48 2 229 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q8PG33 4.81e-63 214 42 0 225 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
Q9EZJ8 4.96e-63 209 48 2 229 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
Q59996 8.75e-63 207 46 1 225 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P38023 2.17e-62 206 38 3 309 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P74565 4.01e-62 206 43 1 235 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52325 7.9e-62 211 42 0 226 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
P26480 1.49e-61 209 42 0 225 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q03066 1.81e-60 202 46 1 225 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P9WGI1 2e-60 204 37 4 331 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 2e-60 204 37 4 331 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 2e-60 204 37 4 331 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O83506 2.14e-60 206 44 0 233 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
P52326 6.56e-60 205 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
Q89B10 7.45e-60 205 42 0 225 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P43766 8.32e-60 205 42 0 225 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q83BB6 9.34e-60 206 42 0 225 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P0A2E3 1.75e-59 204 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 1.75e-59 204 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
O24744 1.91e-59 204 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P00579 2.49e-59 204 41 0 225 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
Q9Z7F0 2.49e-59 202 42 0 233 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
Q9ZMY3 2.92e-59 204 42 2 237 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P55993 5.3e-59 204 42 2 237 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
P32001 5.46e-59 202 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P59117 5.79e-59 202 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 5.79e-59 202 43 0 225 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
P52323 7.63e-59 202 38 3 288 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P57163 1.11e-58 202 41 0 225 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P52327 3.18e-58 201 40 0 225 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
P18249 3.43e-58 193 40 3 295 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56835 8.14e-58 199 41 0 233 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P18333 1.49e-57 198 41 0 233 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q31QG5 2.76e-56 188 39 4 300 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q59914 5.93e-56 187 38 3 296 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
Q60012 1.72e-54 184 36 4 323 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces viridifaciens
P47491 3.95e-51 179 36 6 299 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P43344 1.28e-50 170 40 0 201 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
P78022 7.25e-50 176 35 6 299 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9LD95 1.45e-48 174 36 0 234 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
O22056 3.87e-43 159 35 0 233 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
Q07083 1.61e-41 149 33 6 285 3 sigC RNA polymerase sigma-C factor Myxococcus xanthus
B8H3C3 1.17e-40 147 34 7 276 3 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAW9 1.17e-40 147 34 7 276 1 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9ZSL6 2.82e-40 149 34 1 230 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
Q01624 3.12e-39 143 35 8 262 3 sigB RNA polymerase sigma-B factor Stigmatella aurantiaca (strain DW4/3-1)
O24629 4.54e-34 134 33 6 234 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
Q0J7T6 3.76e-33 131 33 5 231 2 SIGA RNA polymerase sigma factor sigA Oryza sativa subsp. japonica
P50507 1.39e-31 123 32 8 274 3 rpoH RNA polymerase sigma factor RpoH Rhizobium radiobacter
P50512 3.92e-29 116 31 9 274 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P19433 1.41e-27 111 31 6 233 3 sigB RNA polymerase sigma-B factor Myxococcus xanthus
O24621 6.06e-26 111 27 3 229 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
Q89B27 3.41e-24 103 29 8 272 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P50511 2.67e-22 97 28 8 278 3 rpoH RNA polymerase sigma factor RpoH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44404 6.13e-22 96 28 6 255 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8DD54 6.84e-22 96 29 11 284 3 rpoH RNA polymerase sigma factor RpoH Vibrio vulnificus (strain CMCP6)
P42378 3.26e-21 94 29 7 266 3 rpoH RNA polymerase sigma factor RpoH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P06222 3.61e-21 94 27 6 265 1 sigE RNA polymerase sigma-E factor Bacillus subtilis (strain 168)
O05385 4.37e-21 94 28 8 273 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA76 6.83e-21 94 28 8 278 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P62179 9.09e-21 92 27 5 255 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 9.09e-21 92 27 5 255 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 9.09e-21 92 27 5 255 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
Q9ZNX9 1.9e-20 95 29 5 230 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
P19940 7.26e-20 90 26 8 257 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
P50509 1.04e-19 90 27 8 270 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P0AGB3 1.89e-19 90 28 10 280 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 1.89e-19 90 28 10 280 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 1.89e-19 90 28 10 280 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7
P12254 2.21e-18 87 28 7 256 1 sigK RNA polymerase sigma-K factor Bacillus subtilis (strain 168)
P33658 3.48e-18 85 27 6 249 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P35145 3.52e-18 85 28 8 253 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P50510 7.53e-18 85 27 6 247 3 rpoH RNA polymerase sigma factor RpoH Serratia marcescens
P11539 1.33e-17 84 25 6 277 3 rpoH RNA polymerase sigma factor RpoH Citrobacter freundii
P33657 2.35e-17 83 27 7 254 3 sigE RNA polymerase sigma-E factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P07860 4.14e-16 80 28 7 237 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
P50508 2.64e-15 78 27 6 243 3 rpoH RNA polymerase sigma factor RpoH Enterobacter cloacae
P26764 3.52e-15 77 30 6 213 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
P37971 1.62e-14 76 26 8 262 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P62181 2.01e-14 75 25 5 256 1 sigK RNA polymerase sigma-28 factor Bacillus thuringiensis subsp. kurstaki
P62180 2.01e-14 75 25 5 256 3 sigK RNA polymerase sigma-28 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62182 2.01e-14 75 25 5 256 3 sigK RNA polymerase sigma-28 factor Bacillus anthracis
P9WGI3 2.59e-14 75 27 8 248 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 2.59e-14 75 27 8 248 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P37970 1.3e-13 73 27 8 262 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
P10726 9.2e-13 70 26 6 259 1 sigD RNA polymerase sigma-D factor Bacillus subtilis (strain 168)
P26768 1.55e-11 64 32 1 107 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
Q9K5J6 6.14e-11 65 26 7 240 3 sigB RNA polymerase sigma-B factor Bacillus anthracis
P06574 9.01e-10 62 24 7 239 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
P0AEM6 8.15e-09 58 27 6 209 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 8.15e-09 58 27 6 209 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 8.15e-09 58 27 6 209 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P52621 1.64e-08 57 26 6 211 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P17211 2.44e-08 57 25 5 214 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P0A2E8 1.71e-07 55 25 6 209 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 1.71e-07 55 25 6 209 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P29248 3.44e-06 51 25 7 209 3 fliA RNA polymerase sigma factor FliA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13875
Feature type CDS
Gene rpoS
Product RNA polymerase sigma factor RpoS
Location 412519 - 413520 (strand: -1)
Length 1002 (nucleotides) / 333 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2349
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00140 Sigma-70 factor, region 1.2
PF04539 Sigma-70 region 3
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0568 Transcription (K) K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03087 RNA polymerase nonessential primary-like sigma factor Biofilm formation - Escherichia coli
Biofilm formation - Vibrio cholerae		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG000477 RNA polymerase sigma factor RpoS VF0112 Regulation

Protein Sequence

MSRNSLNVNESYDETFVAEQAETEEEEALFDEKQQSEEAEQDDLSSDIELSQNVSQRVLDATQIYLGEIGFSPLLSAEEEVFFARRALRGDPAARQRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELAQKLDHEPTAEEIAQQLDRPVDDVTRMLRLNERITSVDTPVGADSDKVLLDILSDENEVTPENRLQDNNMQQSIVKWLFELNPKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLKDILHNHGLCENSLFN

Flanking regions ( +/- flanking 50bp)

ACGGCAGAACAGCTTGTTCTGCCTGAATTATCTAGGGTAGGAGCAAGCTGATGAGCCGTAATTCACTGAACGTTAACGAGTCATACGACGAAACATTTGTCGCAGAGCAAGCTGAAACTGAGGAAGAAGAGGCGCTGTTTGATGAAAAACAGCAGTCAGAAGAGGCGGAACAGGATGACCTCAGTTCTGATATTGAGCTATCACAGAATGTCAGTCAGCGTGTCCTGGATGCCACTCAGATTTACCTTGGTGAGATAGGCTTTTCACCACTGCTCAGCGCAGAAGAAGAAGTTTTTTTTGCACGACGCGCATTGCGGGGCGATCCCGCTGCGCGTCAGCGTATGATTGAAAGTAACCTCCGTCTGGTGGTTAAAATCTCACGTCGCTACAGTAACCGTGGTCTGGCGCTTTTGGATCTGATTGAAGAGGGAAACCTCGGATTGATCCGCGCAGTCGAAAAATTTGATCCGGAAAAAGGATTCCGTTTTTCAACCTATGCCACCTGGTGGATCCGTCAGACTATCGAACGGGCTATCATGAACCAGACCCGCACCATCCGCCTGCCAATTCATATTGTTAAAGAACTGAACGTTTACCTGCGAACCGCCCGTGAATTAGCACAAAAACTCGACCATGAACCTACTGCGGAAGAAATAGCACAACAGCTTGATCGTCCGGTGGATGATGTCACCCGTATGCTGCGTCTTAATGAGCGCATTACGTCAGTGGATACGCCGGTCGGCGCGGATTCAGATAAAGTACTGCTGGATATTTTATCTGATGAGAATGAGGTCACGCCGGAAAACCGCCTTCAGGATAACAATATGCAGCAGAGTATTGTTAAGTGGTTGTTTGAGCTTAATCCTAAGCAGCGGGAAGTTCTTGCCCGCCGTTTCGGGCTGCTGGGCTATGAAGCGGCAACACTGGAAGATGTGGGGCGCGAAATAGGATTAACCCGTGAGCGTGTGCGTCAGATTCAGGTGGAAGGATTACGCCGCCTGAAAGACATTCTGCATAATCATGGGTTATGTGAGAATTCATTATTCAACTAATTGACTGGTTGAATGTGGATCTCAAAATCGTCACGAGTAATAAGTTAACG