VFG000477


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG000477, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein RNA polymerase sigma factor RpoS
VF ID VF0112
Category Regulation
Protein ID NP_461845
Function Necessary for sustaining a log-phase acid tolerance response (ATR), induction a stationary-phase acid survival system, production of thin aggregative fimbriae and expression of spv gene during stationary phase
Vf_category_id VFC0301

Occurence in the database

VFG000477 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2349 FBDBKF_18965 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S1
1 group_2349 EHELCC_18710 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S2
2 group_2349 NLDBIP_18595 13425 14417 1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S4
3 group_2349 LHKJJB_18580 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S3
4 group_2349 HKOGLL_18315 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S5
5 group_2349 F4V73_RS13875 412519 413520 -1 rpoS RNA polymerase sigma factor RpoS Morganella psychrotolerans
6 group_2349 PMI_RS11015 2425405 2426394 -1 rpoS RNA polymerase sigma factor RpoS Proteus mirabilis HI4320