Homologs in group_1292

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07865 FBDBKF_07865 90.6 Morganella morganii S1 lys9 diaminopimelate dehydrogenase
EHELCC_13695 EHELCC_13695 90.6 Morganella morganii S2 lys9 diaminopimelate dehydrogenase
NLDBIP_14140 NLDBIP_14140 90.6 Morganella morganii S4 lys9 diaminopimelate dehydrogenase
LHKJJB_08710 LHKJJB_08710 90.6 Morganella morganii S3 lys9 diaminopimelate dehydrogenase
HKOGLL_08260 HKOGLL_08260 90.6 Morganella morganii S5 lys9 diaminopimelate dehydrogenase
PMI_RS00725 PMI_RS00725 73.6 Proteus mirabilis HI4320 - diaminopimelate dehydrogenase

Distribution of the homologs in the orthogroup group_1292

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1292

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5L9Q6 2.77e-141 403 64 2 299 1 ddh Meso-diaminopimelate D-dehydrogenase Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)
A3DDX7 4.95e-40 145 32 9 314 1 ddh Meso-diaminopimelate D-dehydrogenase Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
G1UII1 2.38e-38 140 34 11 313 1 ddh Meso-diaminopimelate D-dehydrogenase Ureibacillus thermosphaericus
Q9KWR0 2.88e-38 140 33 10 311 1 dapdh Meso-diaminopimelate D-dehydrogenase Lysinibacillus sphaericus
P04964 3.57e-31 121 28 7 306 1 ddh Meso-diaminopimelate D-dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13155
Feature type CDS
Gene -
Product diaminopimelate dehydrogenase
Location 247855 - 248748 (strand: -1)
Length 894 (nucleotides) / 297 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1292
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01408 Oxidoreductase family, NAD-binding Rossmann fold
PF16654 Diaminopimelic acid dehydrogenase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0673 General function prediction only (R) R Predicted dehydrogenase

Kegg Ortholog Annotation(s)

Protein Sequence

MKKIRAAVVGYGNIGQYAIEALEAADDFEIAGVVRRNPSASDAQIAYPVVADIRELGQVDVALLCSPTRAIRVVAAEILALGINTVDSFDVHSEIVSLKQYLDPIACAGKSTAIISAGWDPGSDSIVRTLMQAMAPKGLTYTNFGPGMSMGHSVAAKAIPGVKDALSMTIPMGTGVHRRMVYVELSEGYDIDTVTAALKADSYFSSDETHVRQVDSVDALKDVGHGVSMIHKGVSGKTHNQLFEYTMRINNPALTSQFMVSAARAACRQQPGAYSVIEIPPVNFLAGDVNSWIHKLV

Flanking regions ( +/- flanking 50bp)

ATAAGTGTGATTTGCTGGAGTTAATAATCAATAGTAACAGAGAGAATCCCGTGAAAAAAATACGTGCAGCCGTCGTCGGTTACGGCAATATTGGTCAGTATGCGATTGAGGCTCTGGAAGCCGCTGATGATTTTGAAATAGCCGGTGTTGTCCGCCGTAATCCGTCTGCTTCTGATGCACAGATTGCGTATCCGGTCGTGGCGGATATCCGCGAACTCGGACAGGTGGATGTGGCGTTGCTGTGTTCGCCGACCAGGGCTATCCGTGTGGTTGCCGCAGAAATATTGGCGCTGGGCATTAATACGGTGGACAGTTTTGATGTCCACAGTGAAATTGTGTCGCTGAAACAATATCTTGATCCGATTGCCTGTGCAGGAAAGAGCACGGCGATTATCTCCGCCGGATGGGATCCCGGATCTGACTCGATTGTCCGCACACTGATGCAGGCGATGGCACCGAAAGGGCTGACGTACACCAATTTCGGACCGGGTATGAGCATGGGGCACAGTGTGGCGGCTAAAGCTATCCCGGGTGTAAAAGACGCGCTCTCCATGACCATTCCGATGGGCACCGGGGTTCACCGCCGTATGGTGTATGTTGAGTTATCAGAAGGTTATGATATCGACACCGTCACGGCAGCACTTAAAGCAGACAGTTACTTTTCTTCTGATGAAACTCACGTCCGTCAGGTTGACAGTGTTGATGCACTGAAAGATGTCGGACACGGCGTGTCGATGATCCACAAAGGTGTGTCCGGCAAAACGCATAATCAGTTATTTGAATATACAATGCGTATTAATAACCCGGCATTAACCTCTCAGTTTATGGTGTCTGCTGCGCGTGCTGCATGTCGCCAGCAGCCGGGGGCTTACAGTGTGATTGAAATTCCGCCGGTGAATTTTCTGGCTGGTGATGTGAATAGCTGGATCCATAAACTGGTGTAACTATTCTGAGTATCTATCGATGTCACAGAATAAAAATAAAAAAGTGGTGA