Homologs in group_1847

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13815 FBDBKF_13815 92.3 Morganella morganii S1 hpaR homoprotocatechuate degradation operon regulator HpaR
EHELCC_11485 EHELCC_11485 92.3 Morganella morganii S2 hpaR homoprotocatechuate degradation operon regulator HpaR
NLDBIP_11830 NLDBIP_11830 92.3 Morganella morganii S4 hpaR homoprotocatechuate degradation operon regulator HpaR
LHKJJB_11690 LHKJJB_11690 92.3 Morganella morganii S3 hpaR homoprotocatechuate degradation operon regulator HpaR
HKOGLL_10300 HKOGLL_10300 92.3 Morganella morganii S5 hpaR homoprotocatechuate degradation operon regulator HpaR
PMI_RS01205 PMI_RS01205 60.4 Proteus mirabilis HI4320 hpaR homoprotocatechuate degradation operon regulator HpaR

Distribution of the homologs in the orthogroup group_1847

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1847

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P62574 4.36e-62 190 61 0 142 3 hpcR Homoprotocatechuate degradative operon repressor Shigella flexneri
P62573 4.36e-62 190 61 0 142 4 hpcR Homoprotocatechuate degradative operon repressor Escherichia coli
P0DPR8 3.03e-42 140 54 0 121 1 farR HTH-type transcriptional regulator FarR Neisseria gonorrhoeae
Q4L8Q3 2.43e-06 47 29 1 89 3 sarZ HTH-type transcriptional regulator SarZ Staphylococcus haemolyticus (strain JCSC1435)
Q93CC3 9.71e-05 43 29 0 67 3 hosA Transcriptional regulator HosA Escherichia coli
P69782 9.71e-05 43 29 0 67 1 hosA Transcriptional regulator HosA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q7ABA6 0.000105 43 29 0 67 3 hosA Transcriptional regulator HosA Escherichia coli O157:H7
O31541 0.000147 43 27 1 107 1 yetL HTH-type transcriptional repressor YetL Bacillus subtilis (strain 168)
Q9F8R8 0.000204 42 26 2 89 3 hosA Transcriptional regulator HosA Escherichia coli O111:H-
P42195 0.000227 42 37 0 69 4 pecS HTH-type transcriptional regulator PecS Dickeya dadantii (strain 3937)
Q9S3W0 0.000279 42 27 1 110 3 slyA Transcriptional regulator SlyA Yersinia enterocolitica
A1JNY1 0.000279 42 27 1 110 3 slyA Transcriptional regulator SlyA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P52003 0.000308 42 25 0 106 1 mexR Multidrug resistance operon repressor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12680
Feature type CDS
Gene hpaR
Product homoprotocatechuate degradation operon regulator HpaR
Location 135004 - 135441 (strand: -1)
Length 438 (nucleotides) / 145 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1847
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01047 MarR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1846 Transcription (K) K DNA-binding transcriptional regulator, MarR family

Protein Sequence

MHESLLIALLQAREVVLGYFRPTLKAHQLTEQQWRIIRILAKTPSLDFHILAQKSCILRPSLTGILTRMEKAGIIHRMKPLSDQRKLYLSLTEEGIALYHRVQAEVEVGYQALEEQFTPEKVEQLYALLDDLIALPQRNNENGQP

Flanking regions ( +/- flanking 50bp)

GAATGAATAAGGGTTTATTATGCGGATACATCGCGGAGACATTACCCATTATGCATGAATCATTACTTATCGCCCTTTTGCAGGCACGCGAAGTGGTCCTCGGCTACTTCCGCCCGACACTGAAAGCCCATCAGCTGACGGAGCAGCAGTGGCGGATTATCCGCATACTGGCAAAAACGCCGTCTCTGGATTTTCATATCCTGGCACAGAAAAGTTGTATTCTGCGCCCGAGCCTGACCGGCATTCTGACGCGGATGGAAAAGGCCGGCATTATCCACCGGATGAAACCGCTCAGTGATCAGCGCAAACTCTATCTTTCCCTTACGGAAGAGGGGATTGCACTCTATCACCGGGTGCAGGCAGAGGTGGAAGTCGGCTATCAGGCACTGGAGGAACAGTTTACGCCGGAGAAAGTAGAGCAGCTTTATGCGTTGCTGGACGATCTGATTGCGCTTCCGCAGCGCAATAATGAAAACGGGCAACCATAAAATACCCGCGCCGCTGCCCTCTGAGAGTAGCGGCGCGGGTAAAACAGCCG