Homologs in group_2039

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15295 FBDBKF_15295 94.7 Morganella morganii S1 ypjD ABC-type uncharacterized transport system, permease component
EHELCC_10950 EHELCC_10950 94.7 Morganella morganii S2 ypjD ABC-type uncharacterized transport system, permease component
NLDBIP_11295 NLDBIP_11295 94.7 Morganella morganii S4 ypjD ABC-type uncharacterized transport system, permease component
LHKJJB_11155 LHKJJB_11155 94.7 Morganella morganii S3 ypjD ABC-type uncharacterized transport system, permease component
HKOGLL_09765 HKOGLL_09765 94.7 Morganella morganii S5 ypjD ABC-type uncharacterized transport system, permease component
PMI_RS01850 PMI_RS01850 69.8 Proteus mirabilis HI4320 - inner membrane protein YpjD

Distribution of the homologs in the orthogroup group_2039

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2039

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64432 1.2e-111 325 61 1 262 1 ypjD Inner membrane protein YpjD Escherichia coli (strain K12)
P64433 1.2e-111 325 61 1 262 3 ypjD Inner membrane protein YpjD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64434 1.2e-111 325 61 1 262 3 ypjD Inner membrane protein YpjD Escherichia coli O157:H7
P45674 3.86e-07 53 26 3 164 4 None Uncharacterized 28.8 kDa protein in nifR3-like 5'region Azospirillum brasilense

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12155
Feature type CDS
Gene -
Product inner membrane protein YpjD
Location 15556 - 16347 (strand: 1)
Length 792 (nucleotides) / 263 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2039
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01578 Cytochrome C assembly protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4137 General function prediction only (R) R ABC-type uncharacterized transport system, permease component

Protein Sequence

MPEISVVAISAYLLSLVLLVPGLLRYHRGYRRLALFFAVIALASHGVAIKSQIFQGVGQNLTLLNLGSVVSLMVSVIMTVVAFQGRAWFLIPIVYSFSMINLVLATLMPGEFITHLQASVPLFVHIGLALLSFATLIIAALYAMQLGWMDHQLKNKRLKFTPDMPPLMVIERKMFHITQVGVVLLTLTLATGIVFMDNIFDKDNIHKSLLSMVAWCVYIVLLWGHYHEGWRGKRVIWFNFAGAFILTLAFFGHRLFQEIMLYA

Flanking regions ( +/- flanking 50bp)

ACTGAAGTATGAATTTTGTTTCATTTCACTGACTGAATAATCACAACACCATGCCTGAAATATCTGTAGTTGCAATAAGCGCTTACCTGTTAAGTCTGGTATTACTGGTTCCGGGTCTGCTCCGCTATCACCGCGGCTACCGGCGACTCGCGCTGTTTTTCGCCGTAATCGCCCTGGCAAGCCATGGTGTGGCGATTAAATCGCAGATTTTTCAGGGGGTCGGGCAGAACCTGACACTGCTTAATCTCGGCTCCGTGGTCAGTTTGATGGTCTCGGTTATCATGACGGTTGTTGCCTTTCAGGGACGCGCCTGGTTTCTGATCCCCATCGTATACAGTTTTTCGATGATAAACCTTGTCCTCGCGACCCTGATGCCGGGCGAATTTATTACGCATTTACAGGCCAGTGTCCCGCTGTTTGTCCACATTGGTCTTGCGCTCCTCAGTTTCGCCACACTGATTATTGCCGCACTCTATGCTATGCAACTCGGCTGGATGGATCATCAGCTGAAAAATAAACGCCTGAAGTTTACGCCGGATATGCCGCCATTAATGGTTATCGAACGCAAGATGTTTCACATCACGCAGGTCGGTGTTGTCTTGCTGACCCTGACACTCGCAACAGGTATAGTTTTCATGGATAACATCTTTGATAAAGATAATATTCATAAATCCCTGCTGTCGATGGTTGCCTGGTGTGTGTATATCGTGCTGCTGTGGGGGCATTATCATGAAGGCTGGCGCGGCAAGCGGGTCATCTGGTTTAACTTTGCCGGCGCTTTTATTCTTACTCTCGCATTTTTCGGACACCGTTTATTTCAGGAAATCATGTTGTATGCGTAAATAACGCATTCACTGAATCTATTATTTCTATACTCAACATCATTCAGGAT