Homologs in group_2039

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15295 FBDBKF_15295 71.0 Morganella morganii S1 ypjD ABC-type uncharacterized transport system, permease component
EHELCC_10950 EHELCC_10950 71.0 Morganella morganii S2 ypjD ABC-type uncharacterized transport system, permease component
NLDBIP_11295 NLDBIP_11295 71.0 Morganella morganii S4 ypjD ABC-type uncharacterized transport system, permease component
LHKJJB_11155 LHKJJB_11155 71.0 Morganella morganii S3 ypjD ABC-type uncharacterized transport system, permease component
HKOGLL_09765 HKOGLL_09765 71.0 Morganella morganii S5 ypjD ABC-type uncharacterized transport system, permease component
F4V73_RS12155 F4V73_RS12155 69.8 Morganella psychrotolerans - inner membrane protein YpjD

Distribution of the homologs in the orthogroup group_2039

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2039

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64432 1.36e-112 327 63 3 265 1 ypjD Inner membrane protein YpjD Escherichia coli (strain K12)
P64433 1.36e-112 327 63 3 265 3 ypjD Inner membrane protein YpjD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64434 1.36e-112 327 63 3 265 3 ypjD Inner membrane protein YpjD Escherichia coli O157:H7
P45674 1.4e-08 57 28 2 142 4 None Uncharacterized 28.8 kDa protein in nifR3-like 5'region Azospirillum brasilense
Q3AXK1 0.000146 45 22 4 162 3 ccsA Cytochrome c biogenesis protein CcsA Synechococcus sp. (strain CC9902)
P48269 0.000547 44 23 2 143 1 ccsA Cytochrome c biogenesis protein CcsA Chlamydomonas reinhardtii
A2BQQ0 0.000619 44 25 4 159 3 ccsA Cytochrome c biogenesis protein CcsA Prochlorococcus marinus (strain AS9601)
A3PCH3 0.00073 43 24 4 159 3 ccsA Cytochrome c biogenesis protein CcsA Prochlorococcus marinus (strain MIT 9301)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01850
Feature type CDS
Gene -
Product inner membrane protein YpjD
Location 435545 - 436345 (strand: -1)
Length 801 (nucleotides) / 266 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2039
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01578 Cytochrome C assembly protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4137 General function prediction only (R) R ABC-type uncharacterized transport system, permease component

Protein Sequence

MPVISISIVAVCAYLLSLVFILPSLLRKEQNGYRGLALLFAVVALVTHAISLKFLIFRPHSGQNLSLTNLGAVVSLMVCVIMTIVASRGRAWFLLPIVYCFSIVNLIIAALMPGEFVTHLESSTSLFIHIGLALLSYATLLIAALYALQLSWLDYQLKNKKLKFSPQMPPLMSIERKMFHITQVGVVLLTLTLCTGLLYMDNIFGKENIHKSIFSIIAWFVYIILLWGHFREGWRGKKVVIFNLIGAIILTLAFFGNRLLQELMLN

Flanking regions ( +/- flanking 50bp)

CACCTAGCGCTATACTAAGCAATTATGTACCCTATTATGTAAGCGAAACTATGCCCGTTATATCAATCTCTATCGTTGCTGTCTGCGCTTATTTACTCAGTCTGGTGTTTATTCTCCCCAGTTTGCTGAGAAAAGAGCAAAATGGATACCGTGGATTAGCGCTGCTTTTTGCGGTGGTCGCCCTTGTGACCCATGCTATCTCATTAAAATTTTTGATTTTCCGTCCACATAGCGGGCAAAATCTGTCACTCACCAATTTAGGGGCGGTGGTCAGTTTAATGGTCTGCGTTATCATGACCATTGTTGCTTCCCGTGGTAGAGCTTGGTTTTTGCTGCCTATTGTTTATTGCTTTTCCATAGTCAATCTCATTATTGCCGCCTTGATGCCAGGTGAGTTTGTCACCCACCTTGAAAGTAGCACATCGCTCTTTATTCATATTGGGCTTGCTTTATTAAGTTACGCCACTTTGTTAATTGCTGCTTTATATGCCTTACAACTCAGCTGGCTCGACTATCAACTAAAAAATAAGAAACTAAAATTTTCACCACAAATGCCACCATTAATGTCAATTGAACGTAAAATGTTTCATATTACCCAAGTGGGGGTAGTATTACTGACATTAACCTTGTGTACCGGCCTGTTATATATGGATAATATTTTTGGTAAAGAAAATATCCATAAATCAATATTTTCTATTATTGCGTGGTTTGTCTACATCATTTTATTATGGGGACACTTCCGTGAGGGTTGGCGTGGGAAAAAAGTGGTTATTTTTAACCTGATCGGTGCCATTATTTTGACATTAGCTTTTTTTGGTAATCGTTTATTGCAAGAGTTAATGCTTAATTAATCTTTTCATTTTAAGGTAGCAAAAGGAACTCAATTTTGGAGCATGTGTCG