COG4137


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4137, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type uncharacterized transport system, permease component
Function(s) descr. General function prediction only (R)

Occurence in the database

COG4137 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2039 FBDBKF_15295 67811 68602 -1 ypjD ABC-type uncharacterized transport system, permease component Morganella morganii S1
1 group_2039 EHELCC_10950 16304 17095 1 ypjD ABC-type uncharacterized transport system, permease component Morganella morganii S2
2 group_2039 NLDBIP_11295 16304 17095 1 ypjD ABC-type uncharacterized transport system, permease component Morganella morganii S4
3 group_2039 LHKJJB_11155 16304 17095 1 ypjD ABC-type uncharacterized transport system, permease component Morganella morganii S3
4 group_2039 HKOGLL_09765 16304 17095 1 ypjD ABC-type uncharacterized transport system, permease component Morganella morganii S5
5 group_2039 F4V73_RS12155 15556 16347 1 inner membrane protein YpjD Morganella psychrotolerans
6 group_2039 PMI_RS01850 435545 436345 -1 inner membrane protein YpjD Proteus mirabilis HI4320