Homologs in group_748

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03330 FBDBKF_03330 96.5 Morganella morganii S1 rng ribonuclease G
EHELCC_07205 EHELCC_07205 96.5 Morganella morganii S2 rng ribonuclease G
NLDBIP_07530 NLDBIP_07530 96.5 Morganella morganii S4 rng ribonuclease G
LHKJJB_07065 LHKJJB_07065 96.5 Morganella morganii S3 rng ribonuclease G
HKOGLL_03865 HKOGLL_03865 96.5 Morganella morganii S5 rng ribonuclease G
PMI_RS18085 PMI_RS18085 84.7 Proteus mirabilis HI4320 rng ribonuclease G

Distribution of the homologs in the orthogroup group_748

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_748

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0A0H3NGK0 0.0 825 82 0 489 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P0A9J3 0.0 822 82 0 489 3 rng Ribonuclease G Shigella flexneri
P0A9J0 0.0 822 82 0 489 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 0.0 822 82 0 489 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 0.0 822 82 0 489 3 rng Ribonuclease G Escherichia coli O157:H7
P45175 0.0 694 68 1 487 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P71905 1.63e-84 283 37 5 413 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0R152 4.06e-84 283 37 5 411 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P21513 4.15e-79 270 37 6 431 1 rne Ribonuclease E Escherichia coli (strain K12)
P44443 1.05e-78 267 39 6 417 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AH3 4.57e-78 253 38 7 395 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8YP69 8.6e-77 257 36 3 379 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q8K9J9 2.44e-76 261 36 8 435 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P72656 1.51e-71 243 36 5 382 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P57429 2.46e-71 246 35 7 437 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P51211 3.98e-64 219 33 3 364 3 rne Ribonuclease E/G-like protein Porphyra purpurea
Q1XDS6 5e-64 219 33 3 368 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
F4IV66 9.47e-56 203 35 6 346 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
O78453 3.78e-18 90 24 15 393 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 1.89e-08 60 22 13 368 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11605
Feature type CDS
Gene rng
Product ribonuclease G
Location 470799 - 472268 (strand: 1)
Length 1470 (nucleotides) / 489 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_748
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF10150 Ribonuclease E/G family
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08301 ribonuclease G [EC:3.1.26.-] - -

Protein Sequence

MTAELLVNVTPSETRVAYITGGILQEIHIEREAKRGIAGNIYKGRVSRVLPGMQAAFIDIGMDKAAFLHASDIIPHTECIAGDEQEKFRTRDIGELVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEEERERLKNIVSGYCDEQGGFIIRTAAEGVGEEELTSDAAFLRRLWTKVIQRKKRNTTRTKIYGELALAHRILRDFAGESLDRIRIDSRLSFSDLQEFVDDYIPEMTAKLELYQGSQPIFDLYDTENEIQRAMERKVEMKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATQVIARQLRLRNLGGIIIIDFIDMTDADHRRRVLSSLEQALSKDRVKTTINGFSQLGLVEMTRKRTRESLEHVLCEKCPACQGRGNVRSVETVCYEVLREIVRVHRLLDVDRFLVYASPAVTEALQGDESHALAEVEIFVGKQVQVRAEPLYSQEHFDVVMM

Flanking regions ( +/- flanking 50bp)

GAAACCCTGAAAGGGACTGTACCGGCACACTTAGATGGAAAAGAAATACCATGACAGCCGAACTTTTAGTCAACGTGACCCCGTCTGAAACACGAGTGGCTTATATTACAGGCGGGATCCTTCAGGAAATTCATATCGAACGCGAAGCAAAACGCGGCATCGCCGGTAATATCTATAAAGGGCGTGTGAGCCGGGTGCTGCCCGGGATGCAGGCGGCCTTTATCGATATTGGCATGGATAAAGCCGCGTTTTTGCACGCCTCTGACATTATTCCGCATACAGAATGTATTGCCGGTGATGAGCAGGAGAAATTCCGTACCCGCGATATCGGGGAGTTGGTGCATCAGGGGCAGGATCTGATTGTCCAGGTGGTGAAAGATCCGCTGGGTACCAAGGGCGCGCGCCTGACCACGGATATCACACTGCCTTCCCGTTATCTGGTCTTTATGCCCGGCGCTTCCCATGTGGGCGTTTCCCAGCGCATTGAAAGTGAAGAAGAGCGCGAGCGGCTGAAAAATATTGTCTCCGGCTATTGTGATGAGCAGGGCGGATTTATTATCCGCACAGCAGCAGAAGGGGTCGGTGAAGAAGAACTGACATCCGATGCGGCGTTTCTCAGACGCCTGTGGACAAAAGTTATCCAGCGCAAAAAACGCAATACCACGCGCACCAAAATTTATGGTGAGTTGGCACTCGCTCACCGCATTCTGCGTGATTTTGCCGGTGAATCACTCGACCGGATCCGCATCGATTCCCGCCTGAGTTTCAGTGATTTGCAGGAGTTTGTGGATGATTATATTCCGGAAATGACCGCAAAACTGGAGTTGTACCAGGGCAGCCAGCCAATTTTTGATCTCTATGATACCGAAAACGAGATCCAGCGGGCGATGGAACGAAAAGTCGAAATGAAATCAGGTGGTTATCTGATTATCGATCAGACTGAAGCGATGACGACAATCGACATCAATACCGGCGCATTTGTGGGACACCGGAATCTGGAAGAAACGATTTTTAATACCAATATTGAGGCAACTCAGGTAATTGCCCGCCAGTTACGGCTGCGCAATCTCGGCGGTATTATTATCATTGATTTTATTGATATGACGGATGCGGATCACCGTCGGCGGGTGCTCAGTTCTCTGGAGCAGGCGCTGTCGAAAGATCGCGTGAAAACGACTATCAATGGTTTCTCTCAGCTCGGGCTGGTGGAAATGACCCGCAAACGTACGCGGGAAAGCCTCGAACATGTTTTATGTGAGAAATGTCCGGCCTGTCAGGGGCGGGGAAATGTCCGCTCCGTGGAAACGGTCTGCTATGAGGTCCTGCGGGAAATTGTCCGCGTTCACCGGCTGCTGGATGTTGATCGCTTCCTGGTATATGCCTCTCCGGCGGTGACAGAAGCTTTGCAGGGTGATGAATCCCATGCACTGGCGGAAGTGGAAATTTTTGTCGGCAAGCAGGTACAGGTCCGCGCAGAACCACTTTACAGTCAGGAACATTTTGATGTGGTGATGATGTAATATACCCAACGTCATTCAAGGTGCTGGCTGAGCGAAGCCAACGAACCTGC